Hb_073171_110

Information

Type -
Description -
Location Contig73171: 97566-105531
Sequence    

Annotation

kegg
ID rcu:RCOM_1489300
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.10.2)
nr
ID XP_012069077.1
description PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
swissprot
ID F4IB81
description LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana GN=LYK3 PE=2 SV=1
trembl
ID A0A067KXC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24855 PE=3 SV=1
Gene Ontology
ID GO:0004674
description lysm domain receptor-like kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56105: 97651-105592
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073171_110 0.0 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
2 Hb_012340_010 0.0809568689 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
3 Hb_003030_020 0.086220437 - - PREDICTED: uncharacterized protein LOC105632544 [Jatropha curcas]
4 Hb_000556_080 0.0937418464 - - PREDICTED: synaptotagmin-5 [Pyrus x bretschneideri]
5 Hb_009048_040 0.101810248 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
6 Hb_000997_210 0.1026451069 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
7 Hb_012055_020 0.105993926 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]
8 Hb_000236_250 0.1065791234 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001135_160 0.109324829 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
10 Hb_098993_010 0.110012633 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
11 Hb_185467_020 0.1104682896 - - Cucumisin precursor, putative [Ricinus communis]
12 Hb_011316_110 0.111002722 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
13 Hb_001040_170 0.1115116595 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_002890_340 0.1115502647 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
15 Hb_000576_030 0.1120996301 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540 [Jatropha curcas]
16 Hb_005754_060 0.1127641565 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000723_260 0.1135769926 - - ethylene insensitive protein, putative [Ricinus communis]
18 Hb_007575_040 0.1149169931 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1-like [Jatropha curcas]
19 Hb_010638_020 0.115109968 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
20 Hb_011224_080 0.1151170455 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_073171_110 Hb_073171_110 Hb_012340_010 Hb_012340_010 Hb_073171_110--Hb_012340_010 Hb_003030_020 Hb_003030_020 Hb_073171_110--Hb_003030_020 Hb_000556_080 Hb_000556_080 Hb_073171_110--Hb_000556_080 Hb_009048_040 Hb_009048_040 Hb_073171_110--Hb_009048_040 Hb_000997_210 Hb_000997_210 Hb_073171_110--Hb_000997_210 Hb_012055_020 Hb_012055_020 Hb_073171_110--Hb_012055_020 Hb_182026_020 Hb_182026_020 Hb_012340_010--Hb_182026_020 Hb_012340_010--Hb_000556_080 Hb_010638_020 Hb_010638_020 Hb_012340_010--Hb_010638_020 Hb_098993_010 Hb_098993_010 Hb_012340_010--Hb_098993_010 Hb_012340_010--Hb_003030_020 Hb_000723_260 Hb_000723_260 Hb_003030_020--Hb_000723_260 Hb_185467_020 Hb_185467_020 Hb_003030_020--Hb_185467_020 Hb_003030_020--Hb_000997_210 Hb_001040_170 Hb_001040_170 Hb_003030_020--Hb_001040_170 Hb_000556_080--Hb_182026_020 Hb_001135_160 Hb_001135_160 Hb_000556_080--Hb_001135_160 Hb_001439_120 Hb_001439_120 Hb_000556_080--Hb_001439_120 Hb_011224_080 Hb_011224_080 Hb_000556_080--Hb_011224_080 Hb_000556_080--Hb_010638_020 Hb_005754_060 Hb_005754_060 Hb_009048_040--Hb_005754_060 Hb_004109_090 Hb_004109_090 Hb_009048_040--Hb_004109_090 Hb_003195_070 Hb_003195_070 Hb_009048_040--Hb_003195_070 Hb_005489_110 Hb_005489_110 Hb_009048_040--Hb_005489_110 Hb_000080_190 Hb_000080_190 Hb_009048_040--Hb_000080_190 Hb_002506_020 Hb_002506_020 Hb_009048_040--Hb_002506_020 Hb_007558_140 Hb_007558_140 Hb_000997_210--Hb_007558_140 Hb_153258_010 Hb_153258_010 Hb_000997_210--Hb_153258_010 Hb_000997_210--Hb_098993_010 Hb_002027_130 Hb_002027_130 Hb_000997_210--Hb_002027_130 Hb_002299_060 Hb_002299_060 Hb_000997_210--Hb_002299_060 Hb_176022_020 Hb_176022_020 Hb_012055_020--Hb_176022_020 Hb_005227_070 Hb_005227_070 Hb_012055_020--Hb_005227_070 Hb_000984_180 Hb_000984_180 Hb_012055_020--Hb_000984_180 Hb_034083_010 Hb_034083_010 Hb_012055_020--Hb_034083_010 Hb_000230_110 Hb_000230_110 Hb_012055_020--Hb_000230_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.075 3.67521 2.94485 7.63785 34.8065 30.6147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9144 17.7137 29.4933 7.69483 10.7694

CAGE analysis