Hb_073339_010

Information

Type -
Description -
Location Contig73339: 621-962
Sequence    

Annotation

kegg
ID pop:POPTR_0014s01410g
description POPTRDRAFT_823861; hypothetical protein
nr
ID ADR71308.1
description hypothetical protein 30 [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID I3NMS1
description Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56165: 437-1015
cDNA
(Sanger)
(ID:Location)		 015_A24.ab1: 440-1015 , 045_I15.ab1: 440-1015

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073339_010 0.0 - - hypothetical protein 30 [Hevea brasiliensis]
2 Hb_000035_130 0.1065863712 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
3 Hb_005965_010 0.120301266 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
4 Hb_006455_110 0.1215218992 - - bromodomain-containing protein, putative [Ricinus communis]
5 Hb_001976_050 0.1349238801 - - PREDICTED: protein SKIP34 [Jatropha curcas]
6 Hb_006723_020 0.1390097512 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
7 Hb_012807_080 0.1423972957 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]
8 Hb_000186_010 0.1462783952 - - PREDICTED: EH domain-containing protein 1 [Jatropha curcas]
9 Hb_001252_170 0.1470180676 desease resistance Gene Name: Exostosin hypothetical protein PRUPE_ppa001357mg [Prunus persica]
10 Hb_144898_010 0.1487873281 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
11 Hb_006455_090 0.1509165622 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
12 Hb_024714_030 0.1510012114 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
13 Hb_143947_010 0.1529671084 - - PREDICTED: deSI-like protein At4g17486 isoform X2 [Pyrus x bretschneideri]
14 Hb_012305_040 0.1554004406 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]
15 Hb_000117_010 0.155452699 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Malus domestica]
16 Hb_000107_140 0.1556065801 - - -
17 Hb_000878_130 0.1564689055 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010298_010 0.1583066905 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
19 Hb_181320_010 0.1598160596 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
20 Hb_000608_180 0.1621404796 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_073339_010 Hb_073339_010 Hb_000035_130 Hb_000035_130 Hb_073339_010--Hb_000035_130 Hb_005965_010 Hb_005965_010 Hb_073339_010--Hb_005965_010 Hb_006455_110 Hb_006455_110 Hb_073339_010--Hb_006455_110 Hb_001976_050 Hb_001976_050 Hb_073339_010--Hb_001976_050 Hb_006723_020 Hb_006723_020 Hb_073339_010--Hb_006723_020 Hb_012807_080 Hb_012807_080 Hb_073339_010--Hb_012807_080 Hb_000035_130--Hb_006723_020 Hb_143947_010 Hb_143947_010 Hb_000035_130--Hb_143947_010 Hb_000035_120 Hb_000035_120 Hb_000035_130--Hb_000035_120 Hb_000538_080 Hb_000538_080 Hb_000035_130--Hb_000538_080 Hb_000878_130 Hb_000878_130 Hb_000035_130--Hb_000878_130 Hb_005965_010--Hb_006455_110 Hb_106005_010 Hb_106005_010 Hb_005965_010--Hb_106005_010 Hb_005965_010--Hb_012807_080 Hb_006455_080 Hb_006455_080 Hb_005965_010--Hb_006455_080 Hb_006455_090 Hb_006455_090 Hb_005965_010--Hb_006455_090 Hb_006455_110--Hb_006455_090 Hb_006455_110--Hb_006455_080 Hb_000295_100 Hb_000295_100 Hb_006455_110--Hb_000295_100 Hb_006455_110--Hb_012807_080 Hb_012286_050 Hb_012286_050 Hb_006455_110--Hb_012286_050 Hb_155375_010 Hb_155375_010 Hb_001976_050--Hb_155375_010 Hb_000032_540 Hb_000032_540 Hb_001976_050--Hb_000032_540 Hb_001976_050--Hb_143947_010 Hb_000510_090 Hb_000510_090 Hb_001976_050--Hb_000510_090 Hb_000705_220 Hb_000705_220 Hb_001976_050--Hb_000705_220 Hb_002259_030 Hb_002259_030 Hb_001976_050--Hb_002259_030 Hb_030328_010 Hb_030328_010 Hb_006723_020--Hb_030328_010 Hb_006723_020--Hb_006455_110 Hb_000347_150 Hb_000347_150 Hb_006723_020--Hb_000347_150 Hb_139859_010 Hb_139859_010 Hb_006723_020--Hb_139859_010 Hb_001477_010 Hb_001477_010 Hb_012807_080--Hb_001477_010 Hb_012807_080--Hb_006455_090 Hb_002046_040 Hb_002046_040 Hb_012807_080--Hb_002046_040 Hb_003299_090 Hb_003299_090 Hb_012807_080--Hb_003299_090 Hb_003711_040 Hb_003711_040 Hb_012807_080--Hb_003711_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
566.454 145.081 17.6291 265.017 368.948 1473.02
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
459.94 262.566 221.901 95.6522 33.2055

CAGE analysis