Hb_073680_010

Information

Type -
Description -
Location Contig73680: 3098-3863
Sequence    

Annotation

kegg
ID rcu:RCOM_0249270
description Coiled-coil domain-containing protein, putative
nr
ID XP_002529167.1
description Coiled-coil domain-containing protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9ST48
description Coiled-coil domain-containing protein, putative OS=Ricinus communis GN=RCOM_0249270 PE=4 SV=1
Gene Ontology
ID GO:0070652
description haus augmin-like complex subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56212: 3191-3861
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073680_010 0.0 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
2 Hb_157950_010 0.000112916 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
3 Hb_003424_040 0.0014074018 - - PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
4 Hb_005081_050 0.0018536122 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Prunus mume]
5 Hb_001922_140 0.0028453295 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000087_110 0.0086776817 - - conserved hypothetical protein [Ricinus communis]
7 Hb_093541_010 0.0106416047 - - conserved hypothetical protein [Ricinus communis]
8 Hb_101724_010 0.01168644 - - glutamate receptor family protein [Populus trichocarpa]
9 Hb_149495_010 0.0147854004 - - putative starch phosphorylase, partial [Sorghum bicolor]
10 Hb_027136_030 0.0152808671 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_002289_160 0.0157129487 - - Polygalacturonase precursor, putative [Ricinus communis]
12 Hb_006198_160 0.0169514219 - - hypothetical protein POPTR_0002s24290g [Populus trichocarpa]
13 Hb_015447_010 0.0191607331 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
14 Hb_099538_020 0.0214553753 - - hypothetical protein POPTR_0010s12650g [Populus trichocarpa]
15 Hb_010261_070 0.0237473191 - - hypothetical protein B456_009G094800 [Gossypium raimondii]
16 Hb_003849_210 0.0254282782 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
17 Hb_005914_190 0.0274177907 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
18 Hb_010128_140 0.0279716816 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
19 Hb_001552_010 0.0314391921 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005356_020 0.0321675497 - - glutaredoxin, grx, putative [Ricinus communis]

Gene co-expression network

sample Hb_073680_010 Hb_073680_010 Hb_157950_010 Hb_157950_010 Hb_073680_010--Hb_157950_010 Hb_003424_040 Hb_003424_040 Hb_073680_010--Hb_003424_040 Hb_005081_050 Hb_005081_050 Hb_073680_010--Hb_005081_050 Hb_001922_140 Hb_001922_140 Hb_073680_010--Hb_001922_140 Hb_000087_110 Hb_000087_110 Hb_073680_010--Hb_000087_110 Hb_093541_010 Hb_093541_010 Hb_073680_010--Hb_093541_010 Hb_157950_010--Hb_003424_040 Hb_157950_010--Hb_005081_050 Hb_157950_010--Hb_001922_140 Hb_157950_010--Hb_000087_110 Hb_157950_010--Hb_093541_010 Hb_003424_040--Hb_001922_140 Hb_003424_040--Hb_005081_050 Hb_003424_040--Hb_000087_110 Hb_003424_040--Hb_093541_010 Hb_005081_050--Hb_001922_140 Hb_005081_050--Hb_000087_110 Hb_005081_050--Hb_093541_010 Hb_001922_140--Hb_000087_110 Hb_149495_010 Hb_149495_010 Hb_001922_140--Hb_149495_010 Hb_000087_110--Hb_093541_010 Hb_101724_010 Hb_101724_010 Hb_000087_110--Hb_101724_010 Hb_006198_160 Hb_006198_160 Hb_000087_110--Hb_006198_160 Hb_093541_010--Hb_101724_010 Hb_093541_010--Hb_006198_160 Hb_015447_010 Hb_015447_010 Hb_093541_010--Hb_015447_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.220403 2.06588 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis