Hb_073973_020

Information

Type -
Description -
Location Contig73973: 9136-17858
Sequence    

Annotation

kegg
ID rcu:RCOM_1031510
description RNA binding protein, putative (EC:3.1.13.1)
nr
ID XP_012078189.1
description PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
swissprot
ID P0DM58
description DIS3-like exonuclease 2 OS=Arabidopsis thaliana GN=SOV PE=1 SV=1
trembl
ID A0A067K983
description DIS3-like exonuclease 2 OS=Jatropha curcas GN=JCGZ_12063 PE=3 SV=1
Gene Ontology
ID GO:0000932
description dis3-like exonuclease 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56319: 9225-14827 , PASA_asmbl_56320: 10201-10501 , PASA_asmbl_56322: 11107-11465 , PASA_asmbl_56323: 16011-17463 , PASA_asmbl_56324: 17465-17689
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073973_020 0.0 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
2 Hb_001307_200 0.0561109282 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
3 Hb_000221_180 0.0902648215 - - VQ motif-containing family protein [Populus trichocarpa]
4 Hb_000417_410 0.1047382623 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
5 Hb_001268_300 0.1075717349 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002888_040 0.1136924408 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
7 Hb_001496_120 0.1221351206 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
8 Hb_001404_090 0.1231849588 - - PREDICTED: kinesin-like protein NACK2 [Camelina sativa]
9 Hb_004096_220 0.1236162237 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
10 Hb_083078_010 0.1243014026 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
11 Hb_000365_220 0.1246049362 - - protein phosphatase-1, putative [Ricinus communis]
12 Hb_000175_270 0.1256322367 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
13 Hb_000438_020 0.1274960885 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
14 Hb_042202_020 0.1284825744 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
15 Hb_026698_020 0.1292160981 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
16 Hb_000032_020 0.1317025226 - - Centromeric protein E, putative [Ricinus communis]
17 Hb_005588_120 0.1318822333 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000256_160 0.136380343 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
19 Hb_000522_010 0.1364345151 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
20 Hb_001430_100 0.1368415406 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_073973_020 Hb_073973_020 Hb_001307_200 Hb_001307_200 Hb_073973_020--Hb_001307_200 Hb_000221_180 Hb_000221_180 Hb_073973_020--Hb_000221_180 Hb_000417_410 Hb_000417_410 Hb_073973_020--Hb_000417_410 Hb_001268_300 Hb_001268_300 Hb_073973_020--Hb_001268_300 Hb_002888_040 Hb_002888_040 Hb_073973_020--Hb_002888_040 Hb_001496_120 Hb_001496_120 Hb_073973_020--Hb_001496_120 Hb_004096_220 Hb_004096_220 Hb_001307_200--Hb_004096_220 Hb_001307_200--Hb_001268_300 Hb_001307_200--Hb_002888_040 Hb_001307_200--Hb_000221_180 Hb_001307_200--Hb_000417_410 Hb_014006_010 Hb_014006_010 Hb_000221_180--Hb_014006_010 Hb_000175_270 Hb_000175_270 Hb_000221_180--Hb_000175_270 Hb_000221_180--Hb_001496_120 Hb_013399_090 Hb_013399_090 Hb_000221_180--Hb_013399_090 Hb_000365_220 Hb_000365_220 Hb_000417_410--Hb_000365_220 Hb_026698_020 Hb_026698_020 Hb_000417_410--Hb_026698_020 Hb_000417_410--Hb_002888_040 Hb_000522_010 Hb_000522_010 Hb_000417_410--Hb_000522_010 Hb_003517_100 Hb_003517_100 Hb_001268_300--Hb_003517_100 Hb_000417_280 Hb_000417_280 Hb_001268_300--Hb_000417_280 Hb_042202_020 Hb_042202_020 Hb_001268_300--Hb_042202_020 Hb_009193_060 Hb_009193_060 Hb_001268_300--Hb_009193_060 Hb_082683_010 Hb_082683_010 Hb_001268_300--Hb_082683_010 Hb_002888_040--Hb_000365_220 Hb_002888_040--Hb_026698_020 Hb_001689_030 Hb_001689_030 Hb_002888_040--Hb_001689_030 Hb_002888_040--Hb_003517_100 Hb_001195_230 Hb_001195_230 Hb_002888_040--Hb_001195_230 Hb_002888_040--Hb_001268_300 Hb_000418_150 Hb_000418_150 Hb_001496_120--Hb_000418_150 Hb_001496_120--Hb_001307_200 Hb_000438_020 Hb_000438_020 Hb_001496_120--Hb_000438_020 Hb_002888_060 Hb_002888_060 Hb_001496_120--Hb_002888_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.64098 25.5804 13.5572 13.2415 2.36917 1.69006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.03819 1.74693 1.82614 21.8729 23.7453

CAGE analysis