Hb_073973_100

Information

Type -
Description -
Location Contig73973: 85699-88422
Sequence    

Annotation

kegg
ID rcu:RCOM_1031760
description hypothetical protein
nr
ID XP_012078198.1
description PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
swissprot
ID Q56YP2
description Phosphatidylinositol 4-phosphate 5-kinase 1 OS=Arabidopsis thaliana GN=PIP5K1 PE=1 SV=1
trembl
ID A0A067K9L4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12069 PE=4 SV=1
Gene Ontology
ID GO:0016301
description phosphatidylinositol-4-phosphate 5-kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56331: 85743-88390 , PASA_asmbl_56332: 85870-87114
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073973_100 0.0 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
2 Hb_003376_330 0.0579765901 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
3 Hb_000270_490 0.0660987481 - - betaine aldehyde dehydrogenase 1 [Jatropha curcas]
4 Hb_000556_120 0.0662438244 - - Spastin, putative [Ricinus communis]
5 Hb_002000_080 0.0697045572 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
6 Hb_023732_030 0.0712699851 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
7 Hb_165928_030 0.0725658884 - - conserved hypothetical protein [Ricinus communis]
8 Hb_026198_070 0.0731260298 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
9 Hb_001252_120 0.0752024384 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
10 Hb_000015_040 0.078919821 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
11 Hb_000329_060 0.0803987403 - - chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]
12 Hb_000120_060 0.0811947514 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus euphratica]
13 Hb_003693_070 0.0817794604 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
14 Hb_004109_310 0.082977387 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
15 Hb_003294_070 0.0841639107 - - hypothetical protein RCOM_1714550 [Ricinus communis]
16 Hb_002481_080 0.0851554787 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
17 Hb_000640_170 0.0858576924 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
18 Hb_002110_190 0.0870762631 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
19 Hb_010142_030 0.0871798142 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_001571_050 0.0879049422 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]

Gene co-expression network

sample Hb_073973_100 Hb_073973_100 Hb_003376_330 Hb_003376_330 Hb_073973_100--Hb_003376_330 Hb_000270_490 Hb_000270_490 Hb_073973_100--Hb_000270_490 Hb_000556_120 Hb_000556_120 Hb_073973_100--Hb_000556_120 Hb_002000_080 Hb_002000_080 Hb_073973_100--Hb_002000_080 Hb_023732_030 Hb_023732_030 Hb_073973_100--Hb_023732_030 Hb_165928_030 Hb_165928_030 Hb_073973_100--Hb_165928_030 Hb_003376_330--Hb_000270_490 Hb_003376_330--Hb_023732_030 Hb_002232_410 Hb_002232_410 Hb_003376_330--Hb_002232_410 Hb_026198_070 Hb_026198_070 Hb_003376_330--Hb_026198_070 Hb_003693_070 Hb_003693_070 Hb_003376_330--Hb_003693_070 Hb_000120_060 Hb_000120_060 Hb_000270_490--Hb_000120_060 Hb_000270_490--Hb_003693_070 Hb_000270_490--Hb_026198_070 Hb_004127_030 Hb_004127_030 Hb_000270_490--Hb_004127_030 Hb_005634_010 Hb_005634_010 Hb_000556_120--Hb_005634_010 Hb_000329_060 Hb_000329_060 Hb_000556_120--Hb_000329_060 Hb_000140_290 Hb_000140_290 Hb_000556_120--Hb_000140_290 Hb_001876_050 Hb_001876_050 Hb_000556_120--Hb_001876_050 Hb_004324_130 Hb_004324_130 Hb_000556_120--Hb_004324_130 Hb_001252_120 Hb_001252_120 Hb_000556_120--Hb_001252_120 Hb_002000_080--Hb_165928_030 Hb_011671_180 Hb_011671_180 Hb_002000_080--Hb_011671_180 Hb_002481_080 Hb_002481_080 Hb_002000_080--Hb_002481_080 Hb_006907_130 Hb_006907_130 Hb_002000_080--Hb_006907_130 Hb_003294_070 Hb_003294_070 Hb_002000_080--Hb_003294_070 Hb_023732_030--Hb_000556_120 Hb_000907_110 Hb_000907_110 Hb_023732_030--Hb_000907_110 Hb_000431_170 Hb_000431_170 Hb_023732_030--Hb_000431_170 Hb_002197_050 Hb_002197_050 Hb_023732_030--Hb_002197_050 Hb_165928_030--Hb_003294_070 Hb_008725_230 Hb_008725_230 Hb_165928_030--Hb_008725_230 Hb_001584_120 Hb_001584_120 Hb_165928_030--Hb_001584_120 Hb_002303_070 Hb_002303_070 Hb_165928_030--Hb_002303_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.58102 6.18258 6.76676 11.525 8.43203 9.89666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5522 9.25466 9.46124 15.6319 7.12486

CAGE analysis