Hb_073973_130

Information

Type -
Description -
Location Contig73973: 102626-109366
Sequence    

Annotation

kegg
ID rcu:RCOM_1031880
description hypothetical protein
nr
ID XP_012078202.1
description PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q6NRL0
description Prolyl-tRNA synthetase associated domain-containing protein 1 OS=Xenopus laevis GN=prorsd1p PE=2 SV=1
trembl
ID A0A067KKJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12072 PE=4 SV=1
Gene Ontology
ID GO:0005829
description prolyl-trna synthetase associated domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56336: 102753-109328 , PASA_asmbl_56337: 105728-106152 , PASA_asmbl_56338: 107630-107854
cDNA
(Sanger)
(ID:Location)		 019_H16.ab1: 106185-109328

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073973_130 0.0 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
2 Hb_000107_190 0.0552373952 - - 50S ribosomal protein L20 [Hevea brasiliensis]
3 Hb_027428_010 0.0560231291 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
4 Hb_002872_030 0.0623536737 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
5 Hb_022132_050 0.0630691446 - - GTP binding protein, putative [Ricinus communis]
6 Hb_005337_090 0.0647566726 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
7 Hb_000610_010 0.0667468803 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
8 Hb_007982_080 0.0668558862 - - PREDICTED: uncharacterized protein LOC105636531 [Jatropha curcas]
9 Hb_058972_010 0.0677089799 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
10 Hb_005588_030 0.0686708883 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
11 Hb_000331_060 0.0687701907 - - PREDICTED: 60S ribosomal protein L17-2-like isoform X2 [Jatropha curcas]
12 Hb_021576_100 0.0705314857 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
13 Hb_000649_230 0.0707087078 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
14 Hb_032920_060 0.0739841873 - - PREDICTED: mitotic checkpoint protein BUB3.1 [Jatropha curcas]
15 Hb_000392_230 0.0743146446 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002119_080 0.076840115 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
17 Hb_008453_140 0.0776304215 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
18 Hb_004122_040 0.0778617868 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
19 Hb_000260_680 0.0784826251 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
20 Hb_007416_300 0.0810667646 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]

Gene co-expression network

sample Hb_073973_130 Hb_073973_130 Hb_000107_190 Hb_000107_190 Hb_073973_130--Hb_000107_190 Hb_027428_010 Hb_027428_010 Hb_073973_130--Hb_027428_010 Hb_002872_030 Hb_002872_030 Hb_073973_130--Hb_002872_030 Hb_022132_050 Hb_022132_050 Hb_073973_130--Hb_022132_050 Hb_005337_090 Hb_005337_090 Hb_073973_130--Hb_005337_090 Hb_000610_010 Hb_000610_010 Hb_073973_130--Hb_000610_010 Hb_002296_050 Hb_002296_050 Hb_000107_190--Hb_002296_050 Hb_000107_190--Hb_000610_010 Hb_002192_080 Hb_002192_080 Hb_000107_190--Hb_002192_080 Hb_058972_010 Hb_058972_010 Hb_000107_190--Hb_058972_010 Hb_000107_190--Hb_005337_090 Hb_027428_010--Hb_002872_030 Hb_027428_010--Hb_005337_090 Hb_006588_070 Hb_006588_070 Hb_027428_010--Hb_006588_070 Hb_000185_070 Hb_000185_070 Hb_027428_010--Hb_000185_070 Hb_010381_090 Hb_010381_090 Hb_027428_010--Hb_010381_090 Hb_002872_030--Hb_010381_090 Hb_008453_140 Hb_008453_140 Hb_002872_030--Hb_008453_140 Hb_007416_300 Hb_007416_300 Hb_002872_030--Hb_007416_300 Hb_002872_030--Hb_006588_070 Hb_022132_050--Hb_002872_030 Hb_000392_230 Hb_000392_230 Hb_022132_050--Hb_000392_230 Hb_022132_050--Hb_006588_070 Hb_000649_230 Hb_000649_230 Hb_022132_050--Hb_000649_230 Hb_022132_050--Hb_027428_010 Hb_001089_110 Hb_001089_110 Hb_005337_090--Hb_001089_110 Hb_000308_030 Hb_000308_030 Hb_005337_090--Hb_000308_030 Hb_000005_220 Hb_000005_220 Hb_005337_090--Hb_000005_220 Hb_033834_030 Hb_033834_030 Hb_005337_090--Hb_033834_030 Hb_000009_530 Hb_000009_530 Hb_000610_010--Hb_000009_530 Hb_004093_090 Hb_004093_090 Hb_000610_010--Hb_004093_090 Hb_003687_230 Hb_003687_230 Hb_000610_010--Hb_003687_230 Hb_003292_040 Hb_003292_040 Hb_000610_010--Hb_003292_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.6364 21.9264 39.3742 21.0846 27.4975 28.0878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0757 31.4069 17.2767 20.3261 10.8629

CAGE analysis