Hb_073973_140

Information

Type transcription factor
Description TF Family: ERF
Location Contig73973: 112297-112995
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08610g
description AP2 domain-containing transcription factor family protein
nr
ID XP_006386376.1
description AP2 domain-containing transcription factor family protein [Populus trichocarpa]
swissprot
ID Q9SFE4
description Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1
trembl
ID A9PLA6
description AP2 domain-containing transcription factor family protein OS=Populus trichocarpa GN=RAP2L16 PE=4 SV=1
Gene Ontology
ID GO:0080090
description ethylene-responsive transcription factor erf014-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073973_140 0.0 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
2 Hb_003376_360 0.1483074964 - - PREDICTED: ubiquitin-like protein 5 [Nelumbo nucifera]
3 Hb_009879_010 0.1483346475 - - phosphate transporter 1 [Hevea brasiliensis]
4 Hb_000005_330 0.1552703952 transcription factor TF Family: ARF PREDICTED: auxin response factor 6 isoform X2 [Jatropha curcas]
5 Hb_001143_170 0.1576325878 - - nucellin, putative [Ricinus communis]
6 Hb_002119_060 0.1617366621 transcription factor TF Family: Orphans histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
7 Hb_000049_120 0.1649619068 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
8 Hb_001123_230 0.1675475628 - - PREDICTED: uncharacterized protein LOC105647321 [Jatropha curcas]
9 Hb_004218_150 0.1682189534 - - electron transporter, putative [Ricinus communis]
10 Hb_000976_160 0.1707329621 - - PREDICTED: uncharacterized protein LOC105646211 isoform X1 [Jatropha curcas]
11 Hb_000300_640 0.172357785 - - PREDICTED: uncharacterized protein LOC100855285 [Vitis vinifera]
12 Hb_000402_200 0.1723932929 - - PREDICTED: uncharacterized protein LOC105644655 [Jatropha curcas]
13 Hb_001357_180 0.1740529632 - - hypothetical protein CISIN_1g036415mg [Citrus sinensis]
14 Hb_018790_060 0.1798384269 - - hypothetical protein JCGZ_21628 [Jatropha curcas]
15 Hb_000124_020 0.1800257544 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
16 Hb_000445_180 0.1802159293 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
17 Hb_001922_190 0.1810637639 - - RecName: Full=Hevamine-A; Includes: RecName: Full=Chitinase; Includes: RecName: Full=Lysozyme; Flags: Precursor [Hevea brasiliensis]
18 Hb_004055_010 0.181481595 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_001205_070 0.1820587224 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
20 Hb_000392_070 0.1838071355 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_073973_140 Hb_073973_140 Hb_003376_360 Hb_003376_360 Hb_073973_140--Hb_003376_360 Hb_009879_010 Hb_009879_010 Hb_073973_140--Hb_009879_010 Hb_000005_330 Hb_000005_330 Hb_073973_140--Hb_000005_330 Hb_001143_170 Hb_001143_170 Hb_073973_140--Hb_001143_170 Hb_002119_060 Hb_002119_060 Hb_073973_140--Hb_002119_060 Hb_000049_120 Hb_000049_120 Hb_073973_140--Hb_000049_120 Hb_000062_550 Hb_000062_550 Hb_003376_360--Hb_000062_550 Hb_000300_640 Hb_000300_640 Hb_003376_360--Hb_000300_640 Hb_004218_150 Hb_004218_150 Hb_003376_360--Hb_004218_150 Hb_000031_060 Hb_000031_060 Hb_003376_360--Hb_000031_060 Hb_000127_130 Hb_000127_130 Hb_003376_360--Hb_000127_130 Hb_006400_040 Hb_006400_040 Hb_003376_360--Hb_006400_040 Hb_000920_240 Hb_000920_240 Hb_009879_010--Hb_000920_240 Hb_000001_050 Hb_000001_050 Hb_009879_010--Hb_000001_050 Hb_029866_040 Hb_029866_040 Hb_009879_010--Hb_029866_040 Hb_000124_020 Hb_000124_020 Hb_009879_010--Hb_000124_020 Hb_000179_050 Hb_000179_050 Hb_009879_010--Hb_000179_050 Hb_022092_120 Hb_022092_120 Hb_000005_330--Hb_022092_120 Hb_000005_330--Hb_000049_120 Hb_000261_440 Hb_000261_440 Hb_000005_330--Hb_000261_440 Hb_005215_030 Hb_005215_030 Hb_000005_330--Hb_005215_030 Hb_000589_270 Hb_000589_270 Hb_000005_330--Hb_000589_270 Hb_020178_070 Hb_020178_070 Hb_000005_330--Hb_020178_070 Hb_021068_050 Hb_021068_050 Hb_001143_170--Hb_021068_050 Hb_026198_050 Hb_026198_050 Hb_001143_170--Hb_026198_050 Hb_007919_050 Hb_007919_050 Hb_001143_170--Hb_007919_050 Hb_001008_060 Hb_001008_060 Hb_001143_170--Hb_001008_060 Hb_159558_030 Hb_159558_030 Hb_001143_170--Hb_159558_030 Hb_001221_410 Hb_001221_410 Hb_001143_170--Hb_001221_410 Hb_009382_020 Hb_009382_020 Hb_002119_060--Hb_009382_020 Hb_031089_010 Hb_031089_010 Hb_002119_060--Hb_031089_010 Hb_000836_360 Hb_000836_360 Hb_002119_060--Hb_000836_360 Hb_002026_100 Hb_002026_100 Hb_002119_060--Hb_002026_100 Hb_002119_060--Hb_006400_040 Hb_000392_070 Hb_000392_070 Hb_002119_060--Hb_000392_070 Hb_061802_020 Hb_061802_020 Hb_000049_120--Hb_061802_020 Hb_004724_420 Hb_004724_420 Hb_000049_120--Hb_004724_420 Hb_000840_210 Hb_000840_210 Hb_000049_120--Hb_000840_210 Hb_001248_130 Hb_001248_130 Hb_000049_120--Hb_001248_130 Hb_000754_040 Hb_000754_040 Hb_000049_120--Hb_000754_040 Hb_093084_050 Hb_093084_050 Hb_000049_120--Hb_093084_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.148 8.04078 0.472497 9.38113 10.839 5.29366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8351 7.39258 14.5531 3.39701 0.378059

CAGE analysis