Hb_073973_180

Information

Type -
Description -
Location Contig73973: 152314-167976
Sequence    

Annotation

kegg
ID pop:POPTR_0005s15820g
description POPTRDRAFT_209849; hypothetical protein
nr
ID XP_010999362.1
description PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]
swissprot
ID Q9SUF1
description WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1
trembl
ID B9H7D1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s15820g PE=4 SV=2
Gene Ontology
ID GO:0016021
description wat1-related protein at4g08290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56349: 165884-167960
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073973_180 0.0 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]
2 Hb_094839_010 0.0703739513 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000417_230 0.0800821313 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002107_080 0.1032531683 - - JHL20J20.3 [Jatropha curcas]
5 Hb_161045_010 0.1123218491 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
6 Hb_001098_020 0.1136992985 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
7 Hb_010573_030 0.11729845 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000134_010 0.1191670585 - - -
9 Hb_007728_010 0.1192518371 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
10 Hb_009393_010 0.1196706504 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
11 Hb_004242_160 0.1223853123 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
12 Hb_004968_050 0.1231544456 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
13 Hb_003071_040 0.1275000521 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
14 Hb_010417_120 0.1283303066 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000318_320 0.132799881 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
16 Hb_000260_130 0.1336950904 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
17 Hb_025477_030 0.1347785501 transcription factor TF Family: ERF dehydration-responsive element-binding protein 2 [Manihot esculenta]
18 Hb_007007_110 0.1380246666 - - hypothetical protein JCGZ_14479 [Jatropha curcas]
19 Hb_137612_010 0.1394958804 - - cytochrome P450, putative [Ricinus communis]
20 Hb_092044_010 0.14005569 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]

Gene co-expression network

sample Hb_073973_180 Hb_073973_180 Hb_094839_010 Hb_094839_010 Hb_073973_180--Hb_094839_010 Hb_000417_230 Hb_000417_230 Hb_073973_180--Hb_000417_230 Hb_002107_080 Hb_002107_080 Hb_073973_180--Hb_002107_080 Hb_161045_010 Hb_161045_010 Hb_073973_180--Hb_161045_010 Hb_001098_020 Hb_001098_020 Hb_073973_180--Hb_001098_020 Hb_010573_030 Hb_010573_030 Hb_073973_180--Hb_010573_030 Hb_094839_010--Hb_000417_230 Hb_094839_010--Hb_010573_030 Hb_000134_010 Hb_000134_010 Hb_094839_010--Hb_000134_010 Hb_094839_010--Hb_002107_080 Hb_007728_010 Hb_007728_010 Hb_094839_010--Hb_007728_010 Hb_000417_230--Hb_002107_080 Hb_000417_230--Hb_010573_030 Hb_003071_040 Hb_003071_040 Hb_000417_230--Hb_003071_040 Hb_004968_050 Hb_004968_050 Hb_000417_230--Hb_004968_050 Hb_002107_080--Hb_004968_050 Hb_000318_320 Hb_000318_320 Hb_002107_080--Hb_000318_320 Hb_002107_080--Hb_010573_030 Hb_001814_100 Hb_001814_100 Hb_161045_010--Hb_001814_100 Hb_000260_130 Hb_000260_130 Hb_161045_010--Hb_000260_130 Hb_004242_160 Hb_004242_160 Hb_161045_010--Hb_004242_160 Hb_002422_030 Hb_002422_030 Hb_161045_010--Hb_002422_030 Hb_161045_010--Hb_001098_020 Hb_001098_020--Hb_003071_040 Hb_001098_020--Hb_004242_160 Hb_000313_190 Hb_000313_190 Hb_001098_020--Hb_000313_190 Hb_000529_050 Hb_000529_050 Hb_001098_020--Hb_000529_050 Hb_001098_020--Hb_094839_010 Hb_010573_030--Hb_007728_010 Hb_002422_020 Hb_002422_020 Hb_010573_030--Hb_002422_020 Hb_137612_010 Hb_137612_010 Hb_010573_030--Hb_137612_010 Hb_013591_010 Hb_013591_010 Hb_010573_030--Hb_013591_010 Hb_010573_030--Hb_000134_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0408135 81.5223 6.16986 33.1218 0.0427495 0.204944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0196478 0.0154601 0 0 2.88512

CAGE analysis