Hb_074109_010

Information

Type -
Description -
Location Contig74109: 1511-2080
Sequence    

Annotation

kegg
ID pop:POPTR_0017s11440g
description hypothetical protein
nr
ID XP_012082941.1
description PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
swissprot
ID Q67UL3
description Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1
trembl
ID A0A067LL56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09724 PE=4 SV=1
Gene Ontology
ID GO:0005783
description auxin efflux carrier component 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56389: 1693-2159
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074109_010 0.0 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
2 Hb_000005_100 0.1345769863 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
3 Hb_003688_140 0.1359183638 - - PREDICTED: uncharacterized protein LOC105640628 [Jatropha curcas]
4 Hb_003055_070 0.1443352328 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
5 Hb_004648_030 0.1465584926 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
6 Hb_000834_060 0.146565957 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_004223_270 0.1488098033 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
8 Hb_121089_010 0.1498388453 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
9 Hb_000002_300 0.1559859122 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
10 Hb_002716_110 0.1560768718 - - PREDICTED: interaptin [Jatropha curcas]
11 Hb_006277_080 0.1575133431 - - PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
12 Hb_003915_020 0.1578442872 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
13 Hb_000181_330 0.1594056309 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
14 Hb_000264_280 0.1596772132 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
15 Hb_005305_010 0.1608611229 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
16 Hb_001227_140 0.1611394491 - - PREDICTED: protein ROS1 [Jatropha curcas]
17 Hb_001619_090 0.1617337099 - - heat shock protein binding protein, putative [Ricinus communis]
18 Hb_000940_030 0.1620198961 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
19 Hb_000479_210 0.1629809595 - - PREDICTED: uncharacterized protein LOC105644126 [Jatropha curcas]
20 Hb_000684_200 0.1633115244 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_074109_010 Hb_074109_010 Hb_000005_100 Hb_000005_100 Hb_074109_010--Hb_000005_100 Hb_003688_140 Hb_003688_140 Hb_074109_010--Hb_003688_140 Hb_003055_070 Hb_003055_070 Hb_074109_010--Hb_003055_070 Hb_004648_030 Hb_004648_030 Hb_074109_010--Hb_004648_030 Hb_000834_060 Hb_000834_060 Hb_074109_010--Hb_000834_060 Hb_004223_270 Hb_004223_270 Hb_074109_010--Hb_004223_270 Hb_000005_100--Hb_004223_270 Hb_022425_050 Hb_022425_050 Hb_000005_100--Hb_022425_050 Hb_000005_100--Hb_003055_070 Hb_000976_130 Hb_000976_130 Hb_000005_100--Hb_000976_130 Hb_007765_130 Hb_007765_130 Hb_000005_100--Hb_007765_130 Hb_001053_020 Hb_001053_020 Hb_000005_100--Hb_001053_020 Hb_000538_300 Hb_000538_300 Hb_003688_140--Hb_000538_300 Hb_000264_280 Hb_000264_280 Hb_003688_140--Hb_000264_280 Hb_000684_200 Hb_000684_200 Hb_003688_140--Hb_000684_200 Hb_003688_140--Hb_000005_100 Hb_004162_270 Hb_004162_270 Hb_003688_140--Hb_004162_270 Hb_010098_040 Hb_010098_040 Hb_003688_140--Hb_010098_040 Hb_000940_030 Hb_000940_030 Hb_003055_070--Hb_000940_030 Hb_003055_070--Hb_007765_130 Hb_000446_040 Hb_000446_040 Hb_003055_070--Hb_000446_040 Hb_000093_140 Hb_000093_140 Hb_003055_070--Hb_000093_140 Hb_003055_070--Hb_004223_270 Hb_000270_280 Hb_000270_280 Hb_004648_030--Hb_000270_280 Hb_004648_030--Hb_004223_270 Hb_000334_050 Hb_000334_050 Hb_004648_030--Hb_000334_050 Hb_003680_090 Hb_003680_090 Hb_004648_030--Hb_003680_090 Hb_004648_030--Hb_004162_270 Hb_004648_030--Hb_000940_030 Hb_142663_020 Hb_142663_020 Hb_000834_060--Hb_142663_020 Hb_000479_210 Hb_000479_210 Hb_000834_060--Hb_000479_210 Hb_000834_060--Hb_000684_200 Hb_005181_120 Hb_005181_120 Hb_000834_060--Hb_005181_120 Hb_000834_060--Hb_010098_040 Hb_010557_010 Hb_010557_010 Hb_000834_060--Hb_010557_010 Hb_000933_110 Hb_000933_110 Hb_004223_270--Hb_000933_110 Hb_004223_270--Hb_000334_050 Hb_004223_270--Hb_022425_050 Hb_001649_030 Hb_001649_030 Hb_004223_270--Hb_001649_030 Hb_005116_100 Hb_005116_100 Hb_004223_270--Hb_005116_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0814137 1.231 2.41578 1.14235 0.0767717 0.0740657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.192792 0.454292 0 0.452714 3.21233

CAGE analysis