Hb_074197_040

Information

Type -
Description -
Location Contig74197: 33881-53721
Sequence    

Annotation

kegg
ID pop:POPTR_0003s11540g
description POPTRDRAFT_712319; KEULE family protein
nr
ID XP_012087094.1
description PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
swissprot
ID Q9C5X3
description SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2
trembl
ID A0A067JNN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20747 PE=4 SV=1
Gene Ontology
ID GO:0005623
description snare-interacting protein keule-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56472: 35656-53602
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074197_040 0.0 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
2 Hb_000078_140 0.0600618403 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
3 Hb_000815_300 0.0676424344 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
4 Hb_011377_040 0.0690463818 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
5 Hb_001301_270 0.0691061522 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
6 Hb_065968_010 0.070152451 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
7 Hb_006970_020 0.0721774626 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
8 Hb_000703_190 0.0769478318 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
9 Hb_001195_400 0.0785635289 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
10 Hb_000979_130 0.0799230257 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
11 Hb_028487_070 0.082344416 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000367_180 0.0834685918 - - Heparanase-2, putative [Ricinus communis]
13 Hb_001014_070 0.0853789544 - - PREDICTED: uncharacterized protein LOC105647305 [Jatropha curcas]
14 Hb_002552_040 0.085670564 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
15 Hb_001269_600 0.0857268345 - - protein phosphatase 2c, putative [Ricinus communis]
16 Hb_170138_010 0.0857918821 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000417_390 0.0860862735 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]
18 Hb_000139_080 0.086233965 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
19 Hb_001703_050 0.0889345514 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
20 Hb_000260_460 0.0891521889 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_074197_040 Hb_074197_040 Hb_000078_140 Hb_000078_140 Hb_074197_040--Hb_000078_140 Hb_000815_300 Hb_000815_300 Hb_074197_040--Hb_000815_300 Hb_011377_040 Hb_011377_040 Hb_074197_040--Hb_011377_040 Hb_001301_270 Hb_001301_270 Hb_074197_040--Hb_001301_270 Hb_065968_010 Hb_065968_010 Hb_074197_040--Hb_065968_010 Hb_006970_020 Hb_006970_020 Hb_074197_040--Hb_006970_020 Hb_000139_080 Hb_000139_080 Hb_000078_140--Hb_000139_080 Hb_079526_040 Hb_079526_040 Hb_000078_140--Hb_079526_040 Hb_032202_220 Hb_032202_220 Hb_000078_140--Hb_032202_220 Hb_003098_070 Hb_003098_070 Hb_000078_140--Hb_003098_070 Hb_001195_400 Hb_001195_400 Hb_000078_140--Hb_001195_400 Hb_002552_040 Hb_002552_040 Hb_000815_300--Hb_002552_040 Hb_000815_300--Hb_006970_020 Hb_000406_210 Hb_000406_210 Hb_000815_300--Hb_000406_210 Hb_000815_300--Hb_000078_140 Hb_001141_240 Hb_001141_240 Hb_000815_300--Hb_001141_240 Hb_011377_040--Hb_006970_020 Hb_012330_010 Hb_012330_010 Hb_011377_040--Hb_012330_010 Hb_011377_040--Hb_001301_270 Hb_011377_040--Hb_000078_140 Hb_000046_540 Hb_000046_540 Hb_011377_040--Hb_000046_540 Hb_001301_270--Hb_032202_220 Hb_001301_270--Hb_006970_020 Hb_001301_270--Hb_000078_140 Hb_001301_270--Hb_000815_300 Hb_001329_250 Hb_001329_250 Hb_001301_270--Hb_001329_250 Hb_002686_200 Hb_002686_200 Hb_065968_010--Hb_002686_200 Hb_003605_020 Hb_003605_020 Hb_065968_010--Hb_003605_020 Hb_159809_070 Hb_159809_070 Hb_065968_010--Hb_159809_070 Hb_065968_010--Hb_002552_040 Hb_001957_010 Hb_001957_010 Hb_065968_010--Hb_001957_010 Hb_002684_020 Hb_002684_020 Hb_006970_020--Hb_002684_020 Hb_006970_020--Hb_000078_140 Hb_000862_100 Hb_000862_100 Hb_006970_020--Hb_000862_100 Hb_015884_020 Hb_015884_020 Hb_006970_020--Hb_015884_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.16373 3.98649 8.06209 9.96264 3.69633 3.73451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.62931 3.73217 5.72275 6.2799 9.71413

CAGE analysis