Hb_074240_030

Information

Type transcription factor
Description TF Family: HMG
Location Contig74240: 44486-46452
Sequence    

Annotation

kegg
ID cit:102614212
description high mobility group B protein 3-like
nr
ID XP_012086327.1
description PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
swissprot
ID P93047
description High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1
trembl
ID W9RDH1
description High mobility group B protein 1 OS=Morus notabilis GN=L484_001986 PE=4 SV=1
Gene Ontology
ID GO:0000785
description high mobility group b protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56529: 44369-46486
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074240_030 0.0 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
2 Hb_000010_320 0.0567386637 - - PREDICTED: protein STICHEL-like 2 [Jatropha curcas]
3 Hb_001856_190 0.0649809504 - - SP1L, putative [Ricinus communis]
4 Hb_015299_040 0.0710342011 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
5 Hb_054615_010 0.0758151885 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
6 Hb_001357_160 0.0772905665 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003090_020 0.0791809079 - - PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]
8 Hb_158845_010 0.0799834688 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Jatropha curcas]
9 Hb_001386_060 0.0820652668 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
10 Hb_089736_010 0.0905805732 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
11 Hb_003592_040 0.092895944 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
12 Hb_059832_010 0.0950638269 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
13 Hb_002243_030 0.1047824442 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]
14 Hb_001369_590 0.1061800827 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
15 Hb_000160_260 0.1067446755 - - nutrient reservoir, putative [Ricinus communis]
16 Hb_004003_020 0.1090621852 - - unnamed protein product [Coffea canephora]
17 Hb_023344_100 0.1102716688 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
18 Hb_000735_190 0.1144422667 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
19 Hb_000107_580 0.1164032043 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
20 Hb_031862_190 0.1168760648 - - -

Gene co-expression network

sample Hb_074240_030 Hb_074240_030 Hb_000010_320 Hb_000010_320 Hb_074240_030--Hb_000010_320 Hb_001856_190 Hb_001856_190 Hb_074240_030--Hb_001856_190 Hb_015299_040 Hb_015299_040 Hb_074240_030--Hb_015299_040 Hb_054615_010 Hb_054615_010 Hb_074240_030--Hb_054615_010 Hb_001357_160 Hb_001357_160 Hb_074240_030--Hb_001357_160 Hb_003090_020 Hb_003090_020 Hb_074240_030--Hb_003090_020 Hb_158845_010 Hb_158845_010 Hb_000010_320--Hb_158845_010 Hb_059832_010 Hb_059832_010 Hb_000010_320--Hb_059832_010 Hb_000010_320--Hb_015299_040 Hb_000397_060 Hb_000397_060 Hb_000010_320--Hb_000397_060 Hb_000010_320--Hb_001856_190 Hb_001386_060 Hb_001386_060 Hb_001856_190--Hb_001386_060 Hb_001856_190--Hb_003090_020 Hb_003592_040 Hb_003592_040 Hb_001856_190--Hb_003592_040 Hb_001856_190--Hb_001357_160 Hb_015299_040--Hb_158845_010 Hb_002243_030 Hb_002243_030 Hb_015299_040--Hb_002243_030 Hb_015299_040--Hb_001357_160 Hb_015299_040--Hb_054615_010 Hb_089736_010 Hb_089736_010 Hb_054615_010--Hb_089736_010 Hb_004003_020 Hb_004003_020 Hb_054615_010--Hb_004003_020 Hb_088118_010 Hb_088118_010 Hb_054615_010--Hb_088118_010 Hb_000152_650 Hb_000152_650 Hb_054615_010--Hb_000152_650 Hb_002121_030 Hb_002121_030 Hb_054615_010--Hb_002121_030 Hb_001357_160--Hb_002243_030 Hb_001357_160--Hb_158845_010 Hb_001357_160--Hb_000010_320 Hb_003090_020--Hb_001386_060 Hb_003090_020--Hb_003592_040 Hb_003090_020--Hb_001357_160 Hb_000362_080 Hb_000362_080 Hb_003090_020--Hb_000362_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.185955 12.4481 3.20131 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.340347 2.87223

CAGE analysis