Hb_074590_010

Information

Type transcription factor
Description TF Family: ERF
Location Contig74590: 4627-4965
Sequence    

Annotation

kegg
ID rcu:RCOM_0710590
description Transcriptional factor TINY, putative
nr
ID AEK82609.1
description ethylene-responsive element binding protein 2 [Hevea brasiliensis]
swissprot
ID Q84QC2
description Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1
trembl
ID G3CU73
description Ethylene-responsive element binding protein 2 OS=Hevea brasiliensis GN=EREBP2 PE=2 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf016-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56686: 4385-5311
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074590_010 0.0 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
2 Hb_001473_120 0.1263579942 - - Uncharacterized protein isoform 1 [Theobroma cacao]
3 Hb_116264_010 0.1285224893 - - hypothetical protein JCGZ_05585 [Jatropha curcas]
4 Hb_007810_030 0.1364949856 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
5 Hb_012395_200 0.1370549744 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002660_160 0.1375815319 - - protein binding protein, putative [Ricinus communis]
7 Hb_009680_050 0.1419423524 - - -
8 Hb_001396_220 0.143300555 - - nuclear transport factor, putative [Ricinus communis]
9 Hb_001935_030 0.1479943552 - - conserved hypothetical protein [Ricinus communis]
10 Hb_029223_030 0.1487585736 - - hypothetical protein POPTR_0006s12500g [Populus trichocarpa]
11 Hb_015934_020 0.1498909859 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
12 Hb_005000_290 0.1499849289 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
13 Hb_007747_130 0.1504830929 - - PREDICTED: uncharacterized protein LOC105635879 [Jatropha curcas]
14 Hb_000362_210 0.1507208561 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
15 Hb_000078_010 0.1508933391 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
16 Hb_008725_200 0.1509104052 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
17 Hb_000329_600 0.1513039803 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
18 Hb_002352_010 0.152976609 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
19 Hb_000427_110 0.153435754 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]
20 Hb_000175_400 0.1542760696 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_074590_010 Hb_074590_010 Hb_001473_120 Hb_001473_120 Hb_074590_010--Hb_001473_120 Hb_116264_010 Hb_116264_010 Hb_074590_010--Hb_116264_010 Hb_007810_030 Hb_007810_030 Hb_074590_010--Hb_007810_030 Hb_012395_200 Hb_012395_200 Hb_074590_010--Hb_012395_200 Hb_002660_160 Hb_002660_160 Hb_074590_010--Hb_002660_160 Hb_009680_050 Hb_009680_050 Hb_074590_010--Hb_009680_050 Hb_001935_030 Hb_001935_030 Hb_001473_120--Hb_001935_030 Hb_001329_210 Hb_001329_210 Hb_001473_120--Hb_001329_210 Hb_001123_120 Hb_001123_120 Hb_001473_120--Hb_001123_120 Hb_007021_020 Hb_007021_020 Hb_001473_120--Hb_007021_020 Hb_001473_120--Hb_002660_160 Hb_010172_030 Hb_010172_030 Hb_001473_120--Hb_010172_030 Hb_111648_010 Hb_111648_010 Hb_116264_010--Hb_111648_010 Hb_001221_510 Hb_001221_510 Hb_116264_010--Hb_001221_510 Hb_004410_010 Hb_004410_010 Hb_116264_010--Hb_004410_010 Hb_116264_010--Hb_002660_160 Hb_000032_220 Hb_000032_220 Hb_116264_010--Hb_000032_220 Hb_002352_010 Hb_002352_010 Hb_116264_010--Hb_002352_010 Hb_015934_020 Hb_015934_020 Hb_007810_030--Hb_015934_020 Hb_000078_010 Hb_000078_010 Hb_007810_030--Hb_000078_010 Hb_000367_280 Hb_000367_280 Hb_007810_030--Hb_000367_280 Hb_011245_020 Hb_011245_020 Hb_007810_030--Hb_011245_020 Hb_001213_120 Hb_001213_120 Hb_007810_030--Hb_001213_120 Hb_007810_030--Hb_000032_220 Hb_000684_160 Hb_000684_160 Hb_012395_200--Hb_000684_160 Hb_001008_010 Hb_001008_010 Hb_012395_200--Hb_001008_010 Hb_012395_200--Hb_000078_010 Hb_001723_080 Hb_001723_080 Hb_012395_200--Hb_001723_080 Hb_012395_200--Hb_007810_030 Hb_000362_210 Hb_000362_210 Hb_002660_160--Hb_000362_210 Hb_002660_160--Hb_007021_020 Hb_002660_160--Hb_010172_030 Hb_007047_010 Hb_007047_010 Hb_002660_160--Hb_007047_010 Hb_000085_250 Hb_000085_250 Hb_002660_160--Hb_000085_250 Hb_002749_100 Hb_002749_100 Hb_002660_160--Hb_002749_100 Hb_012725_090 Hb_012725_090 Hb_009680_050--Hb_012725_090 Hb_064997_010 Hb_064997_010 Hb_009680_050--Hb_064997_010 Hb_094744_010 Hb_094744_010 Hb_009680_050--Hb_094744_010 Hb_001514_230 Hb_001514_230 Hb_009680_050--Hb_001514_230 Hb_000300_010 Hb_000300_010 Hb_009680_050--Hb_000300_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
125.025 22.6814 8.91615 36.5776 70.7326 305.163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
253.138 397.118 287.21 25.3046 2.17581

CAGE analysis