Hb_074683_020

Information

Type -
Description -
Location Contig74683: 14101-14508
Sequence    

Annotation

kegg
ID tcc:TCM_002020
description Ribosomal L27e protein family
nr
ID XP_012090796.1
description PREDICTED: 60S ribosomal protein L27-3 [Jatropha curcas]
swissprot
ID P51419
description 60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2
trembl
ID A0A067JR88
description 60S ribosomal protein L27 OS=Jatropha curcas GN=JCGZ_02471 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56694: 13856-14568
cDNA
(Sanger)
(ID:Location)		 024_E19.ab1: 13941-14566 , 038_P14.ab1: 13910-14568

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074683_020 0.0 - - PREDICTED: 60S ribosomal protein L27-3 [Jatropha curcas]
2 Hb_000093_130 0.0919056092 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
3 Hb_000808_060 0.0995467833 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
4 Hb_000264_060 0.1093204219 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
5 Hb_003581_110 0.1199842182 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
6 Hb_001227_110 0.120141658 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
7 Hb_007416_200 0.126584301 - - PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1 [Jatropha curcas]
8 Hb_000025_750 0.1294767244 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
9 Hb_000363_340 0.1309689993 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
10 Hb_001473_190 0.1319108035 - - 50S ribosomal protein L20 [Hevea brasiliensis]
11 Hb_003813_200 0.1358607398 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_001016_060 0.1394548514 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010298_020 0.1409931948 - - PREDICTED: uncharacterized protein At2g02148 isoform X4 [Vitis vinifera]
14 Hb_000116_570 0.1425726993 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
15 Hb_000322_170 0.1428527655 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
16 Hb_107847_010 0.1467198342 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
17 Hb_000684_300 0.1487337574 transcription factor TF Family: NF-YB hypothetical protein CICLE_v10012920mg [Citrus clementina]
18 Hb_000392_280 0.1497424137 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
19 Hb_001663_110 0.1497440522 - - RNA binding protein, putative [Ricinus communis]
20 Hb_006588_090 0.1498361224 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]

Gene co-expression network

sample Hb_074683_020 Hb_074683_020 Hb_000093_130 Hb_000093_130 Hb_074683_020--Hb_000093_130 Hb_000808_060 Hb_000808_060 Hb_074683_020--Hb_000808_060 Hb_000264_060 Hb_000264_060 Hb_074683_020--Hb_000264_060 Hb_003581_110 Hb_003581_110 Hb_074683_020--Hb_003581_110 Hb_001227_110 Hb_001227_110 Hb_074683_020--Hb_001227_110 Hb_007416_200 Hb_007416_200 Hb_074683_020--Hb_007416_200 Hb_000093_130--Hb_001227_110 Hb_000116_570 Hb_000116_570 Hb_000093_130--Hb_000116_570 Hb_001473_190 Hb_001473_190 Hb_000093_130--Hb_001473_190 Hb_000025_750 Hb_000025_750 Hb_000093_130--Hb_000025_750 Hb_000093_130--Hb_007416_200 Hb_000808_060--Hb_003581_110 Hb_000808_060--Hb_000264_060 Hb_000808_060--Hb_000093_130 Hb_045502_010 Hb_045502_010 Hb_000808_060--Hb_045502_010 Hb_019871_020 Hb_019871_020 Hb_000808_060--Hb_019871_020 Hb_001348_140 Hb_001348_140 Hb_000264_060--Hb_001348_140 Hb_010298_020 Hb_010298_020 Hb_000264_060--Hb_010298_020 Hb_000322_170 Hb_000322_170 Hb_000264_060--Hb_000322_170 Hb_000264_060--Hb_000093_130 Hb_009615_110 Hb_009615_110 Hb_000264_060--Hb_009615_110 Hb_001016_060 Hb_001016_060 Hb_003581_110--Hb_001016_060 Hb_000392_280 Hb_000392_280 Hb_003581_110--Hb_000392_280 Hb_009801_010 Hb_009801_010 Hb_003581_110--Hb_009801_010 Hb_179511_010 Hb_179511_010 Hb_003581_110--Hb_179511_010 Hb_003581_110--Hb_045502_010 Hb_002405_020 Hb_002405_020 Hb_003581_110--Hb_002405_020 Hb_001227_110--Hb_000025_750 Hb_000016_280 Hb_000016_280 Hb_001227_110--Hb_000016_280 Hb_001408_090 Hb_001408_090 Hb_001227_110--Hb_001408_090 Hb_000640_210 Hb_000640_210 Hb_001227_110--Hb_000640_210 Hb_025048_040 Hb_025048_040 Hb_001227_110--Hb_025048_040 Hb_003813_200 Hb_003813_200 Hb_007416_200--Hb_003813_200 Hb_000684_300 Hb_000684_300 Hb_007416_200--Hb_000684_300 Hb_005333_020 Hb_005333_020 Hb_007416_200--Hb_005333_020 Hb_001956_050 Hb_001956_050 Hb_007416_200--Hb_001956_050 Hb_006588_090 Hb_006588_090 Hb_007416_200--Hb_006588_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3565.13 1083.64 793.096 141.255 2816.1 3052.76
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
763.565 1075.9 310.903 266.839 37.6002

CAGE analysis