Hb_074979_020

Information

Type -
Description -
Location Contig74979: 554-937
Sequence    

Annotation

kegg
ID rcu:RCOM_0751500
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002529628.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9C501
description Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
trembl
ID B9SUF9
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0751500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56826: 845-1444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074979_020 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_006641_010 0.090834259 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
3 Hb_000856_260 0.1054808878 transcription factor TF Family: HB hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
4 Hb_012675_070 0.1058367605 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Pyrus x bretschneideri]
5 Hb_001242_110 0.1156053012 - - 40S ribosomal protein S18, putative [Ricinus communis]
6 Hb_037887_010 0.1168950308 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
7 Hb_001155_030 0.1213041176 - - 60S ribosomal protein L10A [Hevea brasiliensis]
8 Hb_000108_140 0.1218950985 - - hypothetical protein CICLE_v10019690mg [Citrus clementina]
9 Hb_000224_120 0.1223499294 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
10 Hb_180301_010 0.1226441373 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
11 Hb_001357_080 0.1234461795 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
12 Hb_154648_010 0.1253832381 - - PREDICTED: uncharacterized protein LOC105634412 isoform X2 [Jatropha curcas]
13 Hb_005588_070 0.1274954477 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
14 Hb_000347_200 0.1301622353 - - lsm1, putative [Ricinus communis]
15 Hb_006429_010 0.1312043548 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
16 Hb_000751_130 0.13123147 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
17 Hb_010436_060 0.1315148059 - - hypothetical protein CISIN_1g0003801mg, partial [Citrus sinensis]
18 Hb_000648_030 0.1321382065 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
19 Hb_001322_150 0.1326589927 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
20 Hb_007594_090 0.1347787675 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]

Gene co-expression network

sample Hb_074979_020 Hb_074979_020 Hb_006641_010 Hb_006641_010 Hb_074979_020--Hb_006641_010 Hb_000856_260 Hb_000856_260 Hb_074979_020--Hb_000856_260 Hb_012675_070 Hb_012675_070 Hb_074979_020--Hb_012675_070 Hb_001242_110 Hb_001242_110 Hb_074979_020--Hb_001242_110 Hb_037887_010 Hb_037887_010 Hb_074979_020--Hb_037887_010 Hb_001155_030 Hb_001155_030 Hb_074979_020--Hb_001155_030 Hb_010436_060 Hb_010436_060 Hb_006641_010--Hb_010436_060 Hb_005117_010 Hb_005117_010 Hb_006641_010--Hb_005117_010 Hb_000028_140 Hb_000028_140 Hb_006641_010--Hb_000028_140 Hb_006641_010--Hb_001155_030 Hb_002759_060 Hb_002759_060 Hb_006641_010--Hb_002759_060 Hb_000898_050 Hb_000898_050 Hb_000856_260--Hb_000898_050 Hb_000224_120 Hb_000224_120 Hb_000856_260--Hb_000224_120 Hb_006429_010 Hb_006429_010 Hb_000856_260--Hb_006429_010 Hb_180301_010 Hb_180301_010 Hb_000856_260--Hb_180301_010 Hb_000635_150 Hb_000635_150 Hb_000856_260--Hb_000635_150 Hb_005588_070 Hb_005588_070 Hb_012675_070--Hb_005588_070 Hb_002259_160 Hb_002259_160 Hb_012675_070--Hb_002259_160 Hb_000083_170 Hb_000083_170 Hb_012675_070--Hb_000083_170 Hb_003352_040 Hb_003352_040 Hb_012675_070--Hb_003352_040 Hb_012675_070--Hb_037887_010 Hb_005400_030 Hb_005400_030 Hb_012675_070--Hb_005400_030 Hb_148209_080 Hb_148209_080 Hb_001242_110--Hb_148209_080 Hb_001242_110--Hb_000028_140 Hb_003996_020 Hb_003996_020 Hb_001242_110--Hb_003996_020 Hb_000227_230 Hb_000227_230 Hb_001242_110--Hb_000227_230 Hb_015175_030 Hb_015175_030 Hb_001242_110--Hb_015175_030 Hb_027073_040 Hb_027073_040 Hb_001242_110--Hb_027073_040 Hb_037887_010--Hb_000083_170 Hb_003092_030 Hb_003092_030 Hb_037887_010--Hb_003092_030 Hb_037887_010--Hb_000898_050 Hb_006198_080 Hb_006198_080 Hb_037887_010--Hb_006198_080 Hb_037887_010--Hb_006429_010 Hb_001584_190 Hb_001584_190 Hb_037887_010--Hb_001584_190 Hb_001155_030--Hb_000028_140 Hb_001829_060 Hb_001829_060 Hb_001155_030--Hb_001829_060 Hb_001155_030--Hb_001242_110 Hb_005731_170 Hb_005731_170 Hb_001155_030--Hb_005731_170 Hb_009666_040 Hb_009666_040 Hb_001155_030--Hb_009666_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.8478 2.53607 1.5304 5.61943 1.93718 15.4245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.985 13.9013 13.1203 5.05541 2.64332

CAGE analysis