Hb_074979_030

Information

Type -
Description -
Location Contig74979: 2631-3038
Sequence    

Annotation

kegg
ID tcc:TCM_036433
description HSP20-like chaperones superfamily protein
nr
ID XP_007020057.1
description HSP20-like chaperones superfamily protein [Theobroma cacao]
swissprot
ID Q38806
description 22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1
trembl
ID A0A061FKT5
description HSP20-like chaperones superfamily protein OS=Theobroma cacao GN=TCM_036433 PE=3 SV=1
Gene Ontology
ID GO:0005783
description kda class iv heat shock protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074979_030 0.0 - - HSP20-like chaperones superfamily protein [Theobroma cacao]
2 Hb_001418_060 0.2293442002 - - -
3 Hb_130134_030 0.230285997 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
4 Hb_001385_090 0.231560219 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
5 Hb_178041_010 0.2337271597 - - PREDICTED: signal peptide peptidase-like 2 [Populus euphratica]
6 Hb_070385_010 0.234435318 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
7 Hb_058702_020 0.2368440647 - - PREDICTED: uncharacterized protein LOC104604814 [Nelumbo nucifera]
8 Hb_088428_010 0.2410159836 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
9 Hb_130134_020 0.2418062787 - - -
10 Hb_036702_010 0.2526094348 - - phosphoprotein phosphatase, putative [Ricinus communis]
11 Hb_011794_020 0.2544641135 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_001050_060 0.2561168885 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
13 Hb_004449_240 0.2586519214 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
14 Hb_000136_190 0.262455195 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
15 Hb_001005_150 0.2651745638 - - -
16 Hb_003492_010 0.2677739241 - - DREPP plasma membrane polypeptide family protein [Populus trichocarpa]
17 Hb_005883_040 0.2688530163 - - hypothetical protein JCGZ_11546 [Jatropha curcas]
18 Hb_002742_070 0.2699310271 - - PREDICTED: villin-4-like [Jatropha curcas]
19 Hb_027295_040 0.2739694636 - - hypothetical protein MIMGU_mgv1a017500mg [Erythranthe guttata]
20 Hb_001019_120 0.2757201074 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]

Gene co-expression network

sample Hb_074979_030 Hb_074979_030 Hb_001418_060 Hb_001418_060 Hb_074979_030--Hb_001418_060 Hb_130134_030 Hb_130134_030 Hb_074979_030--Hb_130134_030 Hb_001385_090 Hb_001385_090 Hb_074979_030--Hb_001385_090 Hb_178041_010 Hb_178041_010 Hb_074979_030--Hb_178041_010 Hb_070385_010 Hb_070385_010 Hb_074979_030--Hb_070385_010 Hb_058702_020 Hb_058702_020 Hb_074979_030--Hb_058702_020 Hb_001418_060--Hb_001385_090 Hb_130134_020 Hb_130134_020 Hb_001418_060--Hb_130134_020 Hb_060054_010 Hb_060054_010 Hb_001418_060--Hb_060054_010 Hb_000589_230 Hb_000589_230 Hb_001418_060--Hb_000589_230 Hb_005016_070 Hb_005016_070 Hb_001418_060--Hb_005016_070 Hb_130134_030--Hb_130134_020 Hb_130134_030--Hb_178041_010 Hb_088428_010 Hb_088428_010 Hb_130134_030--Hb_088428_010 Hb_003376_070 Hb_003376_070 Hb_130134_030--Hb_003376_070 Hb_121467_010 Hb_121467_010 Hb_130134_030--Hb_121467_010 Hb_077211_010 Hb_077211_010 Hb_130134_030--Hb_077211_010 Hb_115578_010 Hb_115578_010 Hb_001385_090--Hb_115578_010 Hb_000295_090 Hb_000295_090 Hb_001385_090--Hb_000295_090 Hb_002249_110 Hb_002249_110 Hb_001385_090--Hb_002249_110 Hb_000523_100 Hb_000523_100 Hb_001385_090--Hb_000523_100 Hb_001385_090--Hb_130134_020 Hb_002742_070 Hb_002742_070 Hb_178041_010--Hb_002742_070 Hb_051437_010 Hb_051437_010 Hb_178041_010--Hb_051437_010 Hb_002815_060 Hb_002815_060 Hb_178041_010--Hb_002815_060 Hb_178041_010--Hb_088428_010 Hb_171788_010 Hb_171788_010 Hb_178041_010--Hb_171788_010 Hb_003297_020 Hb_003297_020 Hb_070385_010--Hb_003297_020 Hb_070385_010--Hb_002249_110 Hb_070385_010--Hb_130134_030 Hb_134956_010 Hb_134956_010 Hb_070385_010--Hb_134956_010 Hb_070385_010--Hb_088428_010 Hb_070385_010--Hb_130134_020 Hb_058702_020--Hb_051437_010 Hb_000976_030 Hb_000976_030 Hb_058702_020--Hb_000976_030 Hb_001252_200 Hb_001252_200 Hb_058702_020--Hb_001252_200 Hb_008029_020 Hb_008029_020 Hb_058702_020--Hb_008029_020 Hb_058702_020--Hb_178041_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.10256 0.399767 0.537218 1.08746 1.06993 5.06369
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.12869 0.533336

CAGE analysis