Hb_075230_010

Information

Type -
Description -
Location Contig75230: 1433-5237
Sequence    

Annotation

kegg
ID gmx:100801584
description E3 ubiquitin-protein ligase UPL5-like
nr
ID XP_003528704.2
description PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max]
swissprot
ID Q9SU29
description E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1
trembl
ID A0A067L209
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00313 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56879: 1395-3044 , PASA_asmbl_56880: 3597-4788 , PASA_asmbl_56881: 4805-5013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075230_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max]
2 Hb_009393_180 0.14327412 - - PREDICTED: uncharacterized protein LOC101292333 [Fragaria vesca subsp. vesca]
3 Hb_001484_100 0.1735706665 - - PREDICTED: cyanate hydratase [Jatropha curcas]
4 Hb_012634_020 0.1811902994 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
5 Hb_001277_190 0.1812681048 - - hypothetical protein CICLE_v10005534mg [Citrus clementina]
6 Hb_027402_040 0.183984997 - - Thioredoxin II, putative [Ricinus communis]
7 Hb_078568_010 0.1906545936 - - hypothetical protein PRUPE_ppa013245mg [Prunus persica]
8 Hb_000099_090 0.1921847381 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
9 Hb_016006_010 0.1929195583 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_003078_030 0.1944894868 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
11 Hb_000836_370 0.1947601542 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
12 Hb_127404_010 0.1984395253 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X1 [Gossypium raimondii]
13 Hb_000445_100 0.1998225676 - - PREDICTED: glutathione S-transferase TCHQD [Jatropha curcas]
14 Hb_001638_030 0.2003229916 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
15 Hb_030116_010 0.2017021731 - - F-box protein, atfbl3, putative [Ricinus communis]
16 Hb_003305_030 0.202013853 - - -
17 Hb_005000_300 0.2024198202 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
18 Hb_000589_060 0.2025142932 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00699 [Jatropha curcas]
19 Hb_006711_070 0.2033450035 - - hypothetical protein RCOM_1336320 [Ricinus communis]
20 Hb_000731_230 0.203762045 - - PREDICTED: abnormal spindle-like microcephaly-associated protein homolog [Jatropha curcas]

Gene co-expression network

sample Hb_075230_010 Hb_075230_010 Hb_009393_180 Hb_009393_180 Hb_075230_010--Hb_009393_180 Hb_001484_100 Hb_001484_100 Hb_075230_010--Hb_001484_100 Hb_012634_020 Hb_012634_020 Hb_075230_010--Hb_012634_020 Hb_001277_190 Hb_001277_190 Hb_075230_010--Hb_001277_190 Hb_027402_040 Hb_027402_040 Hb_075230_010--Hb_027402_040 Hb_078568_010 Hb_078568_010 Hb_075230_010--Hb_078568_010 Hb_030116_010 Hb_030116_010 Hb_009393_180--Hb_030116_010 Hb_004917_040 Hb_004917_040 Hb_009393_180--Hb_004917_040 Hb_155599_010 Hb_155599_010 Hb_009393_180--Hb_155599_010 Hb_000211_120 Hb_000211_120 Hb_009393_180--Hb_000211_120 Hb_046117_010 Hb_046117_010 Hb_009393_180--Hb_046117_010 Hb_005054_310 Hb_005054_310 Hb_001484_100--Hb_005054_310 Hb_000836_370 Hb_000836_370 Hb_001484_100--Hb_000836_370 Hb_085364_010 Hb_085364_010 Hb_001484_100--Hb_085364_010 Hb_003078_030 Hb_003078_030 Hb_001484_100--Hb_003078_030 Hb_005649_090 Hb_005649_090 Hb_001484_100--Hb_005649_090 Hb_030545_030 Hb_030545_030 Hb_001484_100--Hb_030545_030 Hb_002685_200 Hb_002685_200 Hb_012634_020--Hb_002685_200 Hb_000084_240 Hb_000084_240 Hb_012634_020--Hb_000084_240 Hb_000445_100 Hb_000445_100 Hb_012634_020--Hb_000445_100 Hb_002701_210 Hb_002701_210 Hb_012634_020--Hb_002701_210 Hb_001638_030 Hb_001638_030 Hb_012634_020--Hb_001638_030 Hb_003224_030 Hb_003224_030 Hb_012634_020--Hb_003224_030 Hb_095575_010 Hb_095575_010 Hb_001277_190--Hb_095575_010 Hb_002196_010 Hb_002196_010 Hb_001277_190--Hb_002196_010 Hb_127404_010 Hb_127404_010 Hb_001277_190--Hb_127404_010 Hb_003913_030 Hb_003913_030 Hb_001277_190--Hb_003913_030 Hb_001277_190--Hb_012634_020 Hb_003119_050 Hb_003119_050 Hb_027402_040--Hb_003119_050 Hb_003228_030 Hb_003228_030 Hb_027402_040--Hb_003228_030 Hb_027402_040--Hb_005054_310 Hb_163508_010 Hb_163508_010 Hb_027402_040--Hb_163508_010 Hb_027402_040--Hb_000836_370 Hb_005000_300 Hb_005000_300 Hb_027402_040--Hb_005000_300 Hb_170532_010 Hb_170532_010 Hb_078568_010--Hb_170532_010 Hb_000099_090 Hb_000099_090 Hb_078568_010--Hb_000099_090 Hb_016006_010 Hb_016006_010 Hb_078568_010--Hb_016006_010 Hb_003902_060 Hb_003902_060 Hb_078568_010--Hb_003902_060 Hb_000731_230 Hb_000731_230 Hb_078568_010--Hb_000731_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.45514 13.303 9.02724 5.93204 1.16934 4.59013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.92971 2.59158 0.372814 0.856092 0.447599

CAGE analysis