Hb_075351_010

Information

Type -
Description -
Location Contig75351: 11-1141
Sequence    

Annotation

kegg
ID bvg:104907573
description uncharacterized LOC104907573
nr
ID XP_010694817.1
description PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID E2DN01
description Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075351_010 0.0 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
2 Hb_030545_040 0.1202500738 - - -
3 Hb_021650_050 0.2492151306 - - hypothetical protein RCOM_0852210 [Ricinus communis]
4 Hb_012052_030 0.3020962121 - - -
5 Hb_022593_030 0.3056073806 - - polyprotein [Citrus endogenous pararetrovirus]
6 Hb_001673_110 0.3069154543 - - PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
7 Hb_000521_310 0.320006142 - - -
8 Hb_001004_050 0.3259761476 - - PREDICTED: uncharacterized protein LOC103335231 [Prunus mume]
9 Hb_010423_010 0.3349824188 - - -
10 Hb_003292_060 0.3425973912 - - PREDICTED: transcription factor HBP-1b(c38) [Jatropha curcas]
11 Hb_096473_010 0.3530632268 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
12 Hb_004968_010 0.3545093808 - - PREDICTED: receptor-like protein 12 isoform X1 [Populus euphratica]
13 Hb_000589_370 0.3560718843 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
14 Hb_001146_090 0.3567649933 - - valacyclovir hydrolase, putative [Ricinus communis]
15 Hb_002234_230 0.3619698709 - - hypothetical protein JCGZ_26141 [Jatropha curcas]
16 Hb_001140_340 0.3623041553 - - -
17 Hb_001124_030 0.3679494157 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
18 Hb_002447_160 0.3680517201 - - -
19 Hb_000261_270 0.3705224665 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
20 Hb_004800_210 0.3715839072 - - hypothetical protein POPTR_0007s12780g [Populus trichocarpa]

Gene co-expression network

sample Hb_075351_010 Hb_075351_010 Hb_030545_040 Hb_030545_040 Hb_075351_010--Hb_030545_040 Hb_021650_050 Hb_021650_050 Hb_075351_010--Hb_021650_050 Hb_012052_030 Hb_012052_030 Hb_075351_010--Hb_012052_030 Hb_022593_030 Hb_022593_030 Hb_075351_010--Hb_022593_030 Hb_001673_110 Hb_001673_110 Hb_075351_010--Hb_001673_110 Hb_000521_310 Hb_000521_310 Hb_075351_010--Hb_000521_310 Hb_030545_040--Hb_000521_310 Hb_030545_040--Hb_022593_030 Hb_030545_040--Hb_001673_110 Hb_009730_010 Hb_009730_010 Hb_030545_040--Hb_009730_010 Hb_018616_030 Hb_018616_030 Hb_030545_040--Hb_018616_030 Hb_000589_370 Hb_000589_370 Hb_021650_050--Hb_000589_370 Hb_004524_060 Hb_004524_060 Hb_021650_050--Hb_004524_060 Hb_002234_230 Hb_002234_230 Hb_021650_050--Hb_002234_230 Hb_004117_250 Hb_004117_250 Hb_021650_050--Hb_004117_250 Hb_003292_060 Hb_003292_060 Hb_021650_050--Hb_003292_060 Hb_007527_030 Hb_007527_030 Hb_012052_030--Hb_007527_030 Hb_001486_140 Hb_001486_140 Hb_012052_030--Hb_001486_140 Hb_004800_210 Hb_004800_210 Hb_012052_030--Hb_004800_210 Hb_002367_120 Hb_002367_120 Hb_012052_030--Hb_002367_120 Hb_057217_010 Hb_057217_010 Hb_012052_030--Hb_057217_010 Hb_007441_060 Hb_007441_060 Hb_012052_030--Hb_007441_060 Hb_001369_560 Hb_001369_560 Hb_022593_030--Hb_001369_560 Hb_010423_010 Hb_010423_010 Hb_022593_030--Hb_010423_010 Hb_003442_010 Hb_003442_010 Hb_022593_030--Hb_003442_010 Hb_009913_010 Hb_009913_010 Hb_022593_030--Hb_009913_010 Hb_022593_030--Hb_007441_060 Hb_005147_050 Hb_005147_050 Hb_022593_030--Hb_005147_050 Hb_000035_300 Hb_000035_300 Hb_001673_110--Hb_000035_300 Hb_000878_150 Hb_000878_150 Hb_001673_110--Hb_000878_150 Hb_003752_130 Hb_003752_130 Hb_001673_110--Hb_003752_130 Hb_012702_020 Hb_012702_020 Hb_001673_110--Hb_012702_020 Hb_000291_020 Hb_000291_020 Hb_001673_110--Hb_000291_020 Hb_015912_010 Hb_015912_010 Hb_001673_110--Hb_015912_010 Hb_000521_310--Hb_005147_050 Hb_001140_340 Hb_001140_340 Hb_000521_310--Hb_001140_340 Hb_000521_310--Hb_009913_010 Hb_029475_010 Hb_029475_010 Hb_000521_310--Hb_029475_010 Hb_000521_310--Hb_022593_030 Hb_000521_310--Hb_018616_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0195562 0.0162662 0.0154462 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0141123 0

CAGE analysis