Hb_075359_010

Information

Type -
Description -
Location Contig75359: 2536-4684
Sequence    

Annotation

kegg
ID rcu:RCOM_0476750
description eukaryotic translation initiation factor 2c, putative
nr
ID XP_002523757.1
description eukaryotic translation initiation factor 2c, putative [Ricinus communis]
swissprot
ID Q851R2
description Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1
trembl
ID B9SCN8
description Protein argonaute OS=Ricinus communis GN=RCOM_0476750 PE=3 SV=1
Gene Ontology
ID GO:0003676
description eukaryotic translation initiation factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56955: 4464-4829
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075359_010 0.0 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
2 Hb_002843_210 0.1060159709 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
3 Hb_001935_150 0.1347358526 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
4 Hb_042710_010 0.1367044215 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
5 Hb_000025_240 0.1377633925 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
6 Hb_004333_030 0.1402734973 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Jatropha curcas]
7 Hb_187083_010 0.1454055835 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
8 Hb_001296_030 0.1455822129 - - PREDICTED: uncharacterized protein LOC105638276 [Jatropha curcas]
9 Hb_009372_030 0.1495340903 - - 50S ribosomal protein L6, putative [Ricinus communis]
10 Hb_014834_030 0.1526784764 - - -
11 Hb_001638_240 0.1527319853 - - PREDICTED: uncharacterized protein LOC100262493 [Vitis vinifera]
12 Hb_000367_030 0.1538970431 - - hypothetical protein POPTR_0015s06690g [Populus trichocarpa]
13 Hb_002025_300 0.1539648727 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
14 Hb_008748_020 0.1584242121 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
15 Hb_006541_020 0.158809596 - - unknown [Lotus japonicus]
16 Hb_000367_210 0.1591609374 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
17 Hb_007520_060 0.1593709257 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
18 Hb_006718_010 0.1657565566 - - PREDICTED: histone H2AX-like [Elaeis guineensis]
19 Hb_003561_030 0.1673034045 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
20 Hb_030565_040 0.1683443333 - - glycine-rich RNA-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_075359_010 Hb_075359_010 Hb_002843_210 Hb_002843_210 Hb_075359_010--Hb_002843_210 Hb_001935_150 Hb_001935_150 Hb_075359_010--Hb_001935_150 Hb_042710_010 Hb_042710_010 Hb_075359_010--Hb_042710_010 Hb_000025_240 Hb_000025_240 Hb_075359_010--Hb_000025_240 Hb_004333_030 Hb_004333_030 Hb_075359_010--Hb_004333_030 Hb_187083_010 Hb_187083_010 Hb_075359_010--Hb_187083_010 Hb_003561_030 Hb_003561_030 Hb_002843_210--Hb_003561_030 Hb_000367_210 Hb_000367_210 Hb_002843_210--Hb_000367_210 Hb_002843_210--Hb_187083_010 Hb_014834_030 Hb_014834_030 Hb_002843_210--Hb_014834_030 Hb_002025_300 Hb_002025_300 Hb_002843_210--Hb_002025_300 Hb_001935_150--Hb_014834_030 Hb_007894_230 Hb_007894_230 Hb_001935_150--Hb_007894_230 Hb_001935_150--Hb_000025_240 Hb_001638_240 Hb_001638_240 Hb_001935_150--Hb_001638_240 Hb_009372_030 Hb_009372_030 Hb_001935_150--Hb_009372_030 Hb_002631_260 Hb_002631_260 Hb_001935_150--Hb_002631_260 Hb_001296_030 Hb_001296_030 Hb_042710_010--Hb_001296_030 Hb_000419_130 Hb_000419_130 Hb_042710_010--Hb_000419_130 Hb_020035_020 Hb_020035_020 Hb_042710_010--Hb_020035_020 Hb_000493_010 Hb_000493_010 Hb_042710_010--Hb_000493_010 Hb_007594_090 Hb_007594_090 Hb_042710_010--Hb_007594_090 Hb_001610_130 Hb_001610_130 Hb_042710_010--Hb_001610_130 Hb_006541_020 Hb_006541_020 Hb_000025_240--Hb_006541_020 Hb_008748_020 Hb_008748_020 Hb_000025_240--Hb_008748_020 Hb_005914_200 Hb_005914_200 Hb_000025_240--Hb_005914_200 Hb_006718_010 Hb_006718_010 Hb_000025_240--Hb_006718_010 Hb_000025_240--Hb_014834_030 Hb_000025_240--Hb_002025_300 Hb_030565_040 Hb_030565_040 Hb_004333_030--Hb_030565_040 Hb_001623_430 Hb_001623_430 Hb_004333_030--Hb_001623_430 Hb_000318_490 Hb_000318_490 Hb_004333_030--Hb_000318_490 Hb_000896_120 Hb_000896_120 Hb_004333_030--Hb_000896_120 Hb_004333_030--Hb_187083_010 Hb_000106_100 Hb_000106_100 Hb_004333_030--Hb_000106_100 Hb_187083_010--Hb_000367_210 Hb_187083_010--Hb_003561_030 Hb_000236_460 Hb_000236_460 Hb_187083_010--Hb_000236_460 Hb_000163_130 Hb_000163_130 Hb_187083_010--Hb_000163_130 Hb_021409_090 Hb_021409_090 Hb_187083_010--Hb_021409_090 Hb_011161_050 Hb_011161_050 Hb_187083_010--Hb_011161_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.947 3.31502 2.8579 99.3894 4.38675 111.904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
146.49 268.594 145.386 53.8558 6.14973

CAGE analysis