Hb_075449_040

Information

Type -
Description -
Location Contig75449: 13309-21583
Sequence    

Annotation

kegg
ID pop:POPTR_0001s37540g
description POPTRDRAFT_550198; DNA topoisomerase VIA family protein
nr
ID XP_012071023.1
description PREDICTED: meiotic recombination protein SPO11-1 [Jatropha curcas]
swissprot
ID Q9M4A2
description Meiotic recombination protein SPO11-1 OS=Arabidopsis thaliana GN=SPO11-1 PE=1 SV=1
trembl
ID B9GFL2
description DNA topoisomerase VIA family protein OS=Populus trichocarpa GN=POPTR_0001s37540g PE=4 SV=1
Gene Ontology
ID GO:0005694
description meiotic recombination protein spo11-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56977: 21133-21514
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075449_040 0.0 - - PREDICTED: meiotic recombination protein SPO11-1 [Jatropha curcas]
2 Hb_007765_140 0.0795748917 - - PREDICTED: protein NRT1/ PTR FAMILY 8.1-like [Jatropha curcas]
3 Hb_046101_010 0.0977116065 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
4 Hb_000075_110 0.1069987386 - - aldo-keto reductase, putative [Ricinus communis]
5 Hb_000836_390 0.1081371273 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
6 Hb_000359_280 0.1115426088 - - hypothetical protein OsI_15300 [Oryza sativa Indica Group]
7 Hb_165404_010 0.1117744247 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
8 Hb_000120_070 0.1133177861 - - PREDICTED: uncharacterized protein LOC105630351 [Jatropha curcas]
9 Hb_001894_040 0.1136151395 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]
10 Hb_065230_010 0.1155680433 - - PREDICTED: uncharacterized protein LOC100814166 isoform X1 [Glycine max]
11 Hb_000489_020 0.1181483046 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
12 Hb_001102_270 0.1200389958 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
13 Hb_000417_120 0.1200973079 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
14 Hb_000008_080 0.1214648626 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000265_020 0.1263036701 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
16 Hb_006970_150 0.1303529923 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
17 Hb_033045_010 0.1307139007 - - copine, putative [Ricinus communis]
18 Hb_008215_010 0.1317301069 - - conserved hypothetical protein [Ricinus communis]
19 Hb_020285_010 0.1327484647 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
20 Hb_000280_110 0.1339901736 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]

Gene co-expression network

sample Hb_075449_040 Hb_075449_040 Hb_007765_140 Hb_007765_140 Hb_075449_040--Hb_007765_140 Hb_046101_010 Hb_046101_010 Hb_075449_040--Hb_046101_010 Hb_000075_110 Hb_000075_110 Hb_075449_040--Hb_000075_110 Hb_000836_390 Hb_000836_390 Hb_075449_040--Hb_000836_390 Hb_000359_280 Hb_000359_280 Hb_075449_040--Hb_000359_280 Hb_165404_010 Hb_165404_010 Hb_075449_040--Hb_165404_010 Hb_007765_140--Hb_000836_390 Hb_007765_140--Hb_165404_010 Hb_007765_140--Hb_000075_110 Hb_008215_010 Hb_008215_010 Hb_007765_140--Hb_008215_010 Hb_000120_070 Hb_000120_070 Hb_007765_140--Hb_000120_070 Hb_020285_010 Hb_020285_010 Hb_046101_010--Hb_020285_010 Hb_001369_070 Hb_001369_070 Hb_046101_010--Hb_001369_070 Hb_074312_020 Hb_074312_020 Hb_046101_010--Hb_074312_020 Hb_002276_100 Hb_002276_100 Hb_046101_010--Hb_002276_100 Hb_001894_040 Hb_001894_040 Hb_046101_010--Hb_001894_040 Hb_000280_110 Hb_000280_110 Hb_046101_010--Hb_000280_110 Hb_000075_110--Hb_165404_010 Hb_000598_020 Hb_000598_020 Hb_000075_110--Hb_000598_020 Hb_000075_110--Hb_000120_070 Hb_000075_110--Hb_008215_010 Hb_006970_150 Hb_006970_150 Hb_000075_110--Hb_006970_150 Hb_000836_390--Hb_008215_010 Hb_000836_390--Hb_000120_070 Hb_003376_200 Hb_003376_200 Hb_000836_390--Hb_003376_200 Hb_000836_390--Hb_000075_110 Hb_001102_270 Hb_001102_270 Hb_000359_280--Hb_001102_270 Hb_187991_010 Hb_187991_010 Hb_000359_280--Hb_187991_010 Hb_063523_010 Hb_063523_010 Hb_000359_280--Hb_063523_010 Hb_008783_020 Hb_008783_020 Hb_000359_280--Hb_008783_020 Hb_000008_080 Hb_000008_080 Hb_000359_280--Hb_000008_080 Hb_000359_280--Hb_007765_140 Hb_065230_010 Hb_065230_010 Hb_165404_010--Hb_065230_010 Hb_165404_010--Hb_008215_010 Hb_165404_010--Hb_000120_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.766414 0.28505 0.2171 0.0158291 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.546527 0.125875

CAGE analysis