Hb_075449_050

Information

Type -
Description -
Location Contig75449: 22288-24144
Sequence    

Annotation

kegg
ID rcu:RCOM_0522370
description cytochrome P450, putative (EC:1.14.13.68)
nr
ID XP_012071024.1
description PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
swissprot
ID A6YIH8
description Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1
trembl
ID B9S9U3
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_0522370 PE=3 SV=1
Gene Ontology
ID GO:0005506
description premnaspirodiene oxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56979: 22238-24088
cDNA
(Sanger)
(ID:Location)		 009_G08.ab1: 23494-24088 , 053_J01.ab1: 23354-24088

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075449_050 0.0 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
2 Hb_002000_110 0.0952549911 - - ASR-like protein 2 [Hevea brasiliensis]
3 Hb_000107_070 0.1095590993 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
4 Hb_006018_030 0.1110308376 - - PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]
5 Hb_002235_230 0.1580859381 - - latex abundant protein 1 [Hevea brasiliensis]
6 Hb_023214_010 0.1590757363 - - aberrant lateral root formation 1 family protein [Populus trichocarpa]
7 Hb_001741_090 0.1593690801 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
8 Hb_000175_610 0.1617734142 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
9 Hb_002243_080 0.16791955 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Vitis vinifera]
10 Hb_012725_110 0.1707542246 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
11 Hb_000270_410 0.1744896462 - - -
12 Hb_000249_090 0.1773820371 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
13 Hb_048937_030 0.1782090726 - - hypothetical protein RCOM_0231790 [Ricinus communis]
14 Hb_003540_230 0.1785272114 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
15 Hb_001035_040 0.1801832926 - - unnamed protein product [Coffea canephora]
16 Hb_001671_060 0.1819809943 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
17 Hb_004705_030 0.1824904039 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000178_110 0.1851557941 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001780_070 0.185361554 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
20 Hb_054865_130 0.1866675955 - - acyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_075449_050 Hb_075449_050 Hb_002000_110 Hb_002000_110 Hb_075449_050--Hb_002000_110 Hb_000107_070 Hb_000107_070 Hb_075449_050--Hb_000107_070 Hb_006018_030 Hb_006018_030 Hb_075449_050--Hb_006018_030 Hb_002235_230 Hb_002235_230 Hb_075449_050--Hb_002235_230 Hb_023214_010 Hb_023214_010 Hb_075449_050--Hb_023214_010 Hb_001741_090 Hb_001741_090 Hb_075449_050--Hb_001741_090 Hb_002000_110--Hb_002235_230 Hb_004206_030 Hb_004206_030 Hb_002000_110--Hb_004206_030 Hb_002000_110--Hb_000107_070 Hb_012725_110 Hb_012725_110 Hb_002000_110--Hb_012725_110 Hb_000270_410 Hb_000270_410 Hb_002000_110--Hb_000270_410 Hb_000107_070--Hb_023214_010 Hb_001035_040 Hb_001035_040 Hb_000107_070--Hb_001035_040 Hb_000107_070--Hb_001741_090 Hb_003020_310 Hb_003020_310 Hb_000107_070--Hb_003020_310 Hb_048937_030 Hb_048937_030 Hb_006018_030--Hb_048937_030 Hb_006018_030--Hb_000107_070 Hb_001391_020 Hb_001391_020 Hb_006018_030--Hb_001391_020 Hb_001638_210 Hb_001638_210 Hb_006018_030--Hb_001638_210 Hb_001671_060 Hb_001671_060 Hb_006018_030--Hb_001671_060 Hb_006816_440 Hb_006816_440 Hb_002235_230--Hb_006816_440 Hb_003540_230 Hb_003540_230 Hb_002235_230--Hb_003540_230 Hb_149683_010 Hb_149683_010 Hb_002235_230--Hb_149683_010 Hb_002235_230--Hb_001741_090 Hb_001741_080 Hb_001741_080 Hb_002235_230--Hb_001741_080 Hb_005396_040 Hb_005396_040 Hb_023214_010--Hb_005396_040 Hb_124315_040 Hb_124315_040 Hb_023214_010--Hb_124315_040 Hb_023214_010--Hb_003020_310 Hb_023214_010--Hb_001035_040 Hb_007120_070 Hb_007120_070 Hb_023214_010--Hb_007120_070 Hb_148121_010 Hb_148121_010 Hb_001741_090--Hb_148121_010 Hb_001741_090--Hb_001035_040 Hb_001741_090--Hb_149683_010 Hb_001741_090--Hb_002000_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.1675 1.2619 0.487779 3.23904 6.05391 10.9113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
91.2066 21.7696 59.5813 3.95997 0.299008

CAGE analysis