Hb_075481_030

Information

Type -
Description -
Location Contig75481: 39217-43981
Sequence    

Annotation

kegg
ID rcu:RCOM_1066300
description hypothetical protein
nr
ID XP_012079423.1
description PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
swissprot
ID O81242
description DNA-binding protein RHL1 OS=Arabidopsis thaliana GN=RHL1 PE=1 SV=1
trembl
ID A0A067LF23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57008: 39152-43518
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075481_030 0.0 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
2 Hb_000521_260 0.0655611069 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
3 Hb_004162_280 0.0709274832 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
4 Hb_005276_210 0.0716309492 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
5 Hb_004724_320 0.0724629927 - - Vesicle-associated membrane protein, putative [Ricinus communis]
6 Hb_000861_070 0.0768961168 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000173_510 0.0770966452 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
8 Hb_142439_010 0.0771488359 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
9 Hb_054865_100 0.0779185427 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
10 Hb_000051_070 0.079073104 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
11 Hb_000030_040 0.0802772022 - - yth domain-containing protein, putative [Ricinus communis]
12 Hb_001369_420 0.0803759175 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
13 Hb_000116_180 0.081252279 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
14 Hb_000236_100 0.081662288 - - Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
15 Hb_001541_260 0.0825902611 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
16 Hb_017491_030 0.0829373061 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
17 Hb_003952_070 0.0835708685 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_004310_150 0.0835982778 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
19 Hb_008864_110 0.0840186243 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
20 Hb_000152_380 0.0846220656 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_075481_030 Hb_075481_030 Hb_000521_260 Hb_000521_260 Hb_075481_030--Hb_000521_260 Hb_004162_280 Hb_004162_280 Hb_075481_030--Hb_004162_280 Hb_005276_210 Hb_005276_210 Hb_075481_030--Hb_005276_210 Hb_004724_320 Hb_004724_320 Hb_075481_030--Hb_004724_320 Hb_000861_070 Hb_000861_070 Hb_075481_030--Hb_000861_070 Hb_000173_510 Hb_000173_510 Hb_075481_030--Hb_000173_510 Hb_000768_110 Hb_000768_110 Hb_000521_260--Hb_000768_110 Hb_006586_050 Hb_006586_050 Hb_000521_260--Hb_006586_050 Hb_000510_310 Hb_000510_310 Hb_000521_260--Hb_000510_310 Hb_008511_030 Hb_008511_030 Hb_000521_260--Hb_008511_030 Hb_000976_320 Hb_000976_320 Hb_000521_260--Hb_000976_320 Hb_144787_030 Hb_144787_030 Hb_004162_280--Hb_144787_030 Hb_175338_020 Hb_175338_020 Hb_004162_280--Hb_175338_020 Hb_001541_020 Hb_001541_020 Hb_004162_280--Hb_001541_020 Hb_000236_100 Hb_000236_100 Hb_004162_280--Hb_000236_100 Hb_004162_280--Hb_000510_310 Hb_000139_250 Hb_000139_250 Hb_004162_280--Hb_000139_250 Hb_000034_100 Hb_000034_100 Hb_005276_210--Hb_000034_100 Hb_054865_100 Hb_054865_100 Hb_005276_210--Hb_054865_100 Hb_000300_060 Hb_000300_060 Hb_005276_210--Hb_000300_060 Hb_002477_280 Hb_002477_280 Hb_005276_210--Hb_002477_280 Hb_066182_010 Hb_066182_010 Hb_005276_210--Hb_066182_010 Hb_003952_070 Hb_003952_070 Hb_005276_210--Hb_003952_070 Hb_004724_320--Hb_000861_070 Hb_012762_020 Hb_012762_020 Hb_004724_320--Hb_012762_020 Hb_000008_330 Hb_000008_330 Hb_004724_320--Hb_000008_330 Hb_004724_320--Hb_000521_260 Hb_005505_050 Hb_005505_050 Hb_004724_320--Hb_005505_050 Hb_002890_030 Hb_002890_030 Hb_000861_070--Hb_002890_030 Hb_000861_070--Hb_000521_260 Hb_000861_070--Hb_000008_330 Hb_000861_070--Hb_004162_280 Hb_003428_070 Hb_003428_070 Hb_000173_510--Hb_003428_070 Hb_000567_010 Hb_000567_010 Hb_000173_510--Hb_000567_010 Hb_000173_510--Hb_000768_110 Hb_000160_040 Hb_000160_040 Hb_000173_510--Hb_000160_040 Hb_000283_070 Hb_000283_070 Hb_000173_510--Hb_000283_070 Hb_000059_150 Hb_000059_150 Hb_000173_510--Hb_000059_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0895 14.3924 7.06001 9.87976 26.8666 22.7139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.471 16.2723 11.037 9.25253 6.92034

CAGE analysis