Hb_075745_010

Information

Type -
Description -
Location Contig75745: 244-354
Sequence    

Annotation

kegg
ID egr:104440971
description transcription elongation factor 1 homolog
nr
ID KCW76190.1
description hypothetical protein EUGRSUZ_D00579 [Eucalyptus grandis]
swissprot
ID Q8LHP0
description Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1
trembl
ID A0A059CE18
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00579 PE=4 SV=1
Gene Ontology
ID GO:0003746
description transcription elongation factor 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075745_010 0.0 - - hypothetical protein EUGRSUZ_D00579 [Eucalyptus grandis]
2 Hb_003029_100 0.160152905 - - -
3 Hb_000289_080 0.1640801018 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006995_010 0.1841478582 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
5 Hb_003656_150 0.1935096294 - - -
6 Hb_120052_010 0.1950526333 - - hypothetical protein PRUPE_ppa1027171mg [Prunus persica]
7 Hb_012675_080 0.1967794276 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
8 Hb_000086_190 0.1976621964 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
9 Hb_014050_010 0.2077003511 - - PREDICTED: histone H3.3-like, partial [Phoenix dactylifera]
10 Hb_124141_010 0.2127271763 - - plant origin recognition complex subunit, putative [Ricinus communis]
11 Hb_000684_480 0.2138396722 transcription factor TF Family: Orphans -
12 Hb_006198_090 0.2181488893 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
13 Hb_000668_020 0.2203621167 - - -
14 Hb_021943_070 0.229093243 - - -
15 Hb_001584_320 0.2307275783 - - PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
16 Hb_010368_030 0.232763432 - - BnaA07g35570D [Brassica napus]
17 Hb_001712_080 0.2332596852 - - -
18 Hb_177103_010 0.2343624694 - - PREDICTED: histone H2AX [Elaeis guineensis]
19 Hb_007763_050 0.234702921 - - hypothetical protein L484_012752 [Morus notabilis]
20 Hb_166480_010 0.2347256669 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]

Gene co-expression network

sample Hb_075745_010 Hb_075745_010 Hb_003029_100 Hb_003029_100 Hb_075745_010--Hb_003029_100 Hb_000289_080 Hb_000289_080 Hb_075745_010--Hb_000289_080 Hb_006995_010 Hb_006995_010 Hb_075745_010--Hb_006995_010 Hb_003656_150 Hb_003656_150 Hb_075745_010--Hb_003656_150 Hb_120052_010 Hb_120052_010 Hb_075745_010--Hb_120052_010 Hb_012675_080 Hb_012675_080 Hb_075745_010--Hb_012675_080 Hb_003029_100--Hb_000289_080 Hb_003029_100--Hb_006995_010 Hb_003029_100--Hb_003656_150 Hb_000086_190 Hb_000086_190 Hb_003029_100--Hb_000086_190 Hb_124141_010 Hb_124141_010 Hb_003029_100--Hb_124141_010 Hb_006198_090 Hb_006198_090 Hb_003029_100--Hb_006198_090 Hb_000289_080--Hb_006995_010 Hb_000289_080--Hb_000086_190 Hb_000204_020 Hb_000204_020 Hb_000289_080--Hb_000204_020 Hb_000668_020 Hb_000668_020 Hb_000289_080--Hb_000668_020 Hb_000289_080--Hb_003656_150 Hb_006995_010--Hb_003656_150 Hb_006995_010--Hb_012675_080 Hb_006995_010--Hb_000086_190 Hb_006995_010--Hb_006198_090 Hb_007188_030 Hb_007188_030 Hb_003656_150--Hb_007188_030 Hb_003656_150--Hb_012675_080 Hb_003656_150--Hb_006198_090 Hb_003030_040 Hb_003030_040 Hb_003656_150--Hb_003030_040 Hb_120052_010--Hb_000289_080 Hb_120052_010--Hb_003029_100 Hb_120052_010--Hb_000668_020 Hb_002379_040 Hb_002379_040 Hb_120052_010--Hb_002379_040 Hb_002918_190 Hb_002918_190 Hb_120052_010--Hb_002918_190 Hb_000015_070 Hb_000015_070 Hb_012675_080--Hb_000015_070 Hb_012675_080--Hb_000086_190 Hb_001396_250 Hb_001396_250 Hb_012675_080--Hb_001396_250 Hb_011037_020 Hb_011037_020 Hb_012675_080--Hb_011037_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3544.75 499.125 34993.7 177.665 74829.6
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10597.5 19988.9 2397.15 1510.13 2558.94

CAGE analysis