Hb_075764_010

Information

Type -
Description -
Location Contig75764: 7147-9630
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09220g
description POPTRDRAFT_831908; hypothetical protein
nr
ID XP_012087991.1
description PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
swissprot
ID Q8GWC3
description PRA1 family protein A2 OS=Arabidopsis thaliana GN=PRA1A2 PE=2 SV=1
trembl
ID A0A067JKX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25111 PE=4 SV=1
Gene Ontology
ID GO:0005737
description pra1 family protein a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57149: 7284-8179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075764_010 0.0 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
2 Hb_088163_010 0.0995900904 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
3 Hb_000230_180 0.1000461489 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
4 Hb_099878_050 0.1156419948 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
5 Hb_002611_020 0.1172121812 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
6 Hb_165402_010 0.1176477315 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
7 Hb_002122_010 0.1207609911 - - -
8 Hb_090158_010 0.1269806385 - - hypothetical protein RCOM_1968400 [Ricinus communis]
9 Hb_000696_010 0.1290510799 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
10 Hb_001191_110 0.1322923035 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
11 Hb_005170_010 0.1393910189 - - -
12 Hb_000359_140 0.1411161018 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
13 Hb_001829_040 0.1417220147 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
14 Hb_002192_090 0.1441740374 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
15 Hb_001135_140 0.1460630764 - - PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]
16 Hb_106415_010 0.1465545318 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
17 Hb_000074_060 0.1471331409 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
18 Hb_000850_040 0.1478290708 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001747_030 0.1524792812 - - hypothetical protein F383_08210 [Gossypium arboreum]
20 Hb_004040_030 0.1529992932 - - PREDICTED: probable inactive purple acid phosphatase 28 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_075764_010 Hb_075764_010 Hb_088163_010 Hb_088163_010 Hb_075764_010--Hb_088163_010 Hb_000230_180 Hb_000230_180 Hb_075764_010--Hb_000230_180 Hb_099878_050 Hb_099878_050 Hb_075764_010--Hb_099878_050 Hb_002611_020 Hb_002611_020 Hb_075764_010--Hb_002611_020 Hb_165402_010 Hb_165402_010 Hb_075764_010--Hb_165402_010 Hb_002122_010 Hb_002122_010 Hb_075764_010--Hb_002122_010 Hb_001767_130 Hb_001767_130 Hb_088163_010--Hb_001767_130 Hb_088163_010--Hb_000230_180 Hb_088163_010--Hb_099878_050 Hb_090158_010 Hb_090158_010 Hb_088163_010--Hb_090158_010 Hb_088163_010--Hb_165402_010 Hb_000230_180--Hb_002611_020 Hb_005170_010 Hb_005170_010 Hb_000230_180--Hb_005170_010 Hb_086639_080 Hb_086639_080 Hb_000230_180--Hb_086639_080 Hb_002498_050 Hb_002498_050 Hb_000230_180--Hb_002498_050 Hb_000696_010 Hb_000696_010 Hb_000230_180--Hb_000696_010 Hb_106415_010 Hb_106415_010 Hb_099878_050--Hb_106415_010 Hb_012506_010 Hb_012506_010 Hb_099878_050--Hb_012506_010 Hb_013358_090 Hb_013358_090 Hb_099878_050--Hb_013358_090 Hb_133724_010 Hb_133724_010 Hb_099878_050--Hb_133724_010 Hb_002687_080 Hb_002687_080 Hb_099878_050--Hb_002687_080 Hb_181328_010 Hb_181328_010 Hb_002611_020--Hb_181328_010 Hb_002400_330 Hb_002400_330 Hb_002611_020--Hb_002400_330 Hb_002611_020--Hb_002122_010 Hb_002611_020--Hb_005170_010 Hb_002611_020--Hb_000696_010 Hb_181441_010 Hb_181441_010 Hb_165402_010--Hb_181441_010 Hb_106688_010 Hb_106688_010 Hb_165402_010--Hb_106688_010 Hb_165402_010--Hb_000230_180 Hb_077573_010 Hb_077573_010 Hb_165402_010--Hb_077573_010 Hb_165402_010--Hb_002611_020 Hb_002122_010--Hb_000230_180 Hb_001191_110 Hb_001191_110 Hb_002122_010--Hb_001191_110 Hb_002122_010--Hb_000696_010 Hb_010003_010 Hb_010003_010 Hb_002122_010--Hb_010003_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.1214 36.468 46.9859 167.664 52.0458 117.472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.9548 48.3521 22.2206 56.106 23.2169

CAGE analysis