Hb_075812_010

Information

Type -
Description -
Location Contig75812: 1591-2140
Sequence    

Annotation

kegg
ID pop:POPTR_0005s04330g
description hypothetical protein
nr
ID XP_006382672.1
description hypothetical protein POPTR_0005s04330g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GDW4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s04330g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075812_010 0.0 - - hypothetical protein POPTR_0005s04330g [Populus trichocarpa]
2 Hb_000853_370 0.1296898132 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
3 Hb_000926_270 0.132255948 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
4 Hb_000117_040 0.1322899017 - - 30S ribosomal protein S6A [Hevea brasiliensis]
5 Hb_004223_230 0.1338645007 transcription factor TF Family: ARF PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
6 Hb_004295_020 0.1395044798 - - thioredoxin II-type 1 [Hevea brasiliensis]
7 Hb_050964_020 0.1427083004 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC1-like [Populus euphratica]
8 Hb_003507_020 0.1434247287 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
9 Hb_000038_130 0.1439578379 - - -
10 Hb_005016_030 0.1444438733 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
11 Hb_002783_230 0.1461567551 - - neutral/alkaline invertase [Manihot esculenta]
12 Hb_000816_110 0.1475547562 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
13 Hb_004586_190 0.1497440196 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
14 Hb_001514_200 0.1552152081 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
15 Hb_000163_290 0.1555007512 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
16 Hb_002149_040 0.1558332202 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000692_260 0.156763305 - - PREDICTED: uncharacterized protein LOC105635282 [Jatropha curcas]
18 Hb_001016_060 0.1573419156 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006740_020 0.1585455035 - - PREDICTED: bis(5'-adenosyl)-triphosphatase [Jatropha curcas]
20 Hb_014067_010 0.1587459892 - - hypothetical protein JCGZ_09524 [Jatropha curcas]

Gene co-expression network

sample Hb_075812_010 Hb_075812_010 Hb_000853_370 Hb_000853_370 Hb_075812_010--Hb_000853_370 Hb_000926_270 Hb_000926_270 Hb_075812_010--Hb_000926_270 Hb_000117_040 Hb_000117_040 Hb_075812_010--Hb_000117_040 Hb_004223_230 Hb_004223_230 Hb_075812_010--Hb_004223_230 Hb_004295_020 Hb_004295_020 Hb_075812_010--Hb_004295_020 Hb_050964_020 Hb_050964_020 Hb_075812_010--Hb_050964_020 Hb_003507_020 Hb_003507_020 Hb_000853_370--Hb_003507_020 Hb_003627_020 Hb_003627_020 Hb_000853_370--Hb_003627_020 Hb_014067_010 Hb_014067_010 Hb_000853_370--Hb_014067_010 Hb_000853_370--Hb_050964_020 Hb_007178_010 Hb_007178_010 Hb_000853_370--Hb_007178_010 Hb_154381_050 Hb_154381_050 Hb_000853_370--Hb_154381_050 Hb_002149_040 Hb_002149_040 Hb_000926_270--Hb_002149_040 Hb_005016_030 Hb_005016_030 Hb_000926_270--Hb_005016_030 Hb_001776_080 Hb_001776_080 Hb_000926_270--Hb_001776_080 Hb_000953_140 Hb_000953_140 Hb_000926_270--Hb_000953_140 Hb_000692_260 Hb_000692_260 Hb_000926_270--Hb_000692_260 Hb_001016_060 Hb_001016_060 Hb_000926_270--Hb_001016_060 Hb_011609_190 Hb_011609_190 Hb_000117_040--Hb_011609_190 Hb_000163_290 Hb_000163_290 Hb_000117_040--Hb_000163_290 Hb_026048_090 Hb_026048_090 Hb_000117_040--Hb_026048_090 Hb_000371_110 Hb_000371_110 Hb_000117_040--Hb_000371_110 Hb_004813_010 Hb_004813_010 Hb_000117_040--Hb_004813_010 Hb_000179_250 Hb_000179_250 Hb_000117_040--Hb_000179_250 Hb_005031_070 Hb_005031_070 Hb_004223_230--Hb_005031_070 Hb_004223_230--Hb_004295_020 Hb_030620_010 Hb_030620_010 Hb_004223_230--Hb_030620_010 Hb_004223_230--Hb_000117_040 Hb_102864_010 Hb_102864_010 Hb_004223_230--Hb_102864_010 Hb_000313_380 Hb_000313_380 Hb_004223_230--Hb_000313_380 Hb_007992_030 Hb_007992_030 Hb_004295_020--Hb_007992_030 Hb_000847_070 Hb_000847_070 Hb_004295_020--Hb_000847_070 Hb_000045_130 Hb_000045_130 Hb_004295_020--Hb_000045_130 Hb_052135_030 Hb_052135_030 Hb_004295_020--Hb_052135_030 Hb_017170_020 Hb_017170_020 Hb_004295_020--Hb_017170_020 Hb_005410_010 Hb_005410_010 Hb_050964_020--Hb_005410_010 Hb_050964_020--Hb_003507_020 Hb_002405_020 Hb_002405_020 Hb_050964_020--Hb_002405_020 Hb_050964_020--Hb_002149_040 Hb_001628_110 Hb_001628_110 Hb_050964_020--Hb_001628_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.49321 2.1934 0.153561 0.173787 6.85295 7.03608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.53055 5.60273 3.10568 0.472289 0

CAGE analysis