Hb_076038_010

Information

Type -
Description -
Location Contig76038: 3348-4042
Sequence    

Annotation

kegg
ID rcu:RCOM_1323920
description hypothetical protein
nr
ID XP_002520000.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S1Y1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1323920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57276: 2442-2747
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_076038_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000243_020 0.1895376152 - - -
3 Hb_001277_160 0.196281547 - - hypothetical protein MIMGU_mgv1a019742mg, partial [Erythranthe guttata]
4 Hb_100105_010 0.1967799307 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
5 Hb_001277_190 0.2484718576 - - hypothetical protein CICLE_v10005534mg [Citrus clementina]
6 Hb_001449_060 0.2531615792 - - kelch repeat protein, putative [Ricinus communis]
7 Hb_075230_010 0.2547781155 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max]
8 Hb_008096_040 0.2561335967 - - hypothetical protein PRUPE_ppa001351mg [Prunus persica]
9 Hb_008667_040 0.2576926741 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
10 Hb_004204_090 0.260232625 - - hypothetical protein JCGZ_11697 [Jatropha curcas]
11 Hb_007778_020 0.2608177549 - - -
12 Hb_000302_130 0.263371452 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
13 Hb_009393_180 0.2693417287 - - PREDICTED: uncharacterized protein LOC101292333 [Fragaria vesca subsp. vesca]
14 Hb_000932_080 0.2695486412 - - -
15 Hb_003902_060 0.2712854689 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
16 Hb_000264_290 0.2764851367 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
17 Hb_000122_050 0.278368737 - - conserved hypothetical protein [Ricinus communis]
18 Hb_170487_010 0.2785888411 - - -
19 Hb_079733_010 0.2790192449 - - -
20 Hb_000258_320 0.2804302521 - - -

Gene co-expression network

sample Hb_076038_010 Hb_076038_010 Hb_000243_020 Hb_000243_020 Hb_076038_010--Hb_000243_020 Hb_001277_160 Hb_001277_160 Hb_076038_010--Hb_001277_160 Hb_100105_010 Hb_100105_010 Hb_076038_010--Hb_100105_010 Hb_001277_190 Hb_001277_190 Hb_076038_010--Hb_001277_190 Hb_001449_060 Hb_001449_060 Hb_076038_010--Hb_001449_060 Hb_075230_010 Hb_075230_010 Hb_076038_010--Hb_075230_010 Hb_000243_020--Hb_001277_160 Hb_000334_200 Hb_000334_200 Hb_000243_020--Hb_000334_200 Hb_002326_070 Hb_002326_070 Hb_000243_020--Hb_002326_070 Hb_000932_080 Hb_000932_080 Hb_000243_020--Hb_000932_080 Hb_001396_170 Hb_001396_170 Hb_000243_020--Hb_001396_170 Hb_001277_160--Hb_001277_190 Hb_001341_110 Hb_001341_110 Hb_001277_160--Hb_001341_110 Hb_007778_020 Hb_007778_020 Hb_001277_160--Hb_007778_020 Hb_004204_090 Hb_004204_090 Hb_001277_160--Hb_004204_090 Hb_000302_130 Hb_000302_130 Hb_100105_010--Hb_000302_130 Hb_008667_040 Hb_008667_040 Hb_100105_010--Hb_008667_040 Hb_000264_290 Hb_000264_290 Hb_100105_010--Hb_000264_290 Hb_000152_230 Hb_000152_230 Hb_100105_010--Hb_000152_230 Hb_188996_010 Hb_188996_010 Hb_100105_010--Hb_188996_010 Hb_003902_060 Hb_003902_060 Hb_100105_010--Hb_003902_060 Hb_001277_190--Hb_075230_010 Hb_095575_010 Hb_095575_010 Hb_001277_190--Hb_095575_010 Hb_002196_010 Hb_002196_010 Hb_001277_190--Hb_002196_010 Hb_127404_010 Hb_127404_010 Hb_001277_190--Hb_127404_010 Hb_003913_030 Hb_003913_030 Hb_001277_190--Hb_003913_030 Hb_012634_020 Hb_012634_020 Hb_001277_190--Hb_012634_020 Hb_003098_010 Hb_003098_010 Hb_001449_060--Hb_003098_010 Hb_005730_130 Hb_005730_130 Hb_001449_060--Hb_005730_130 Hb_001077_020 Hb_001077_020 Hb_001449_060--Hb_001077_020 Hb_000311_030 Hb_000311_030 Hb_001449_060--Hb_000311_030 Hb_002847_020 Hb_002847_020 Hb_001449_060--Hb_002847_020 Hb_009393_180 Hb_009393_180 Hb_075230_010--Hb_009393_180 Hb_001484_100 Hb_001484_100 Hb_075230_010--Hb_001484_100 Hb_075230_010--Hb_012634_020 Hb_027402_040 Hb_027402_040 Hb_075230_010--Hb_027402_040 Hb_078568_010 Hb_078568_010 Hb_075230_010--Hb_078568_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
242.571 214.612 61.838 104.851 29.9999 84.3172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
88.5874 94.7811 0 0 0

CAGE analysis