Hb_076233_010

Information

Type -
Description -
Location Contig76233: 5898-6254
Sequence    

Annotation

kegg
ID rcu:RCOM_0953390
description hypothetical protein
nr
ID XP_002515858.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQ39
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0953390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_076233_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000646_020 0.1643086013 - - putative gag protein [Coffea canephora]
3 Hb_026620_010 0.1815348137 - - -
4 Hb_000184_140 0.1823229526 - - conserved hypothetical protein [Ricinus communis]
5 Hb_119600_020 0.1848401342 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
6 Hb_020805_160 0.2050297315 - - -
7 Hb_007545_200 0.2132178192 - - Pectinesterase-3 precursor, putative [Ricinus communis]
8 Hb_000343_170 0.2233534224 - - PREDICTED: probable sulfate transporter 3.4 [Jatropha curcas]
9 Hb_002498_210 0.2299527116 - - SKU5 similar 4 isoform 3 [Theobroma cacao]
10 Hb_052802_010 0.2504669185 - - kinase, putative [Ricinus communis]
11 Hb_001794_080 0.2570625837 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001114_030 0.267323926 - - Brown planthopper resistance protein [Oryza sativa Indica Group]
13 Hb_031022_040 0.2718286812 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
14 Hb_000903_050 0.2720809467 - - hypothetical protein A259_26892 [Pseudomonas syringae pv. actinidiae ICMP 19070]
15 Hb_005306_200 0.272240243 - - -
16 Hb_005511_070 0.2725543224 - - -
17 Hb_000115_260 0.2726819735 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH75 [Vitis vinifera]
18 Hb_000056_180 0.2752572921 - - -
19 Hb_000259_100 0.2753204519 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
20 Hb_000061_080 0.2759110003 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]

Gene co-expression network

sample Hb_076233_010 Hb_076233_010 Hb_000646_020 Hb_000646_020 Hb_076233_010--Hb_000646_020 Hb_026620_010 Hb_026620_010 Hb_076233_010--Hb_026620_010 Hb_000184_140 Hb_000184_140 Hb_076233_010--Hb_000184_140 Hb_119600_020 Hb_119600_020 Hb_076233_010--Hb_119600_020 Hb_020805_160 Hb_020805_160 Hb_076233_010--Hb_020805_160 Hb_007545_200 Hb_007545_200 Hb_076233_010--Hb_007545_200 Hb_002498_210 Hb_002498_210 Hb_000646_020--Hb_002498_210 Hb_001114_030 Hb_001114_030 Hb_000646_020--Hb_001114_030 Hb_001794_080 Hb_001794_080 Hb_000646_020--Hb_001794_080 Hb_000646_020--Hb_000184_140 Hb_000646_020--Hb_026620_010 Hb_026620_010--Hb_119600_020 Hb_002053_070 Hb_002053_070 Hb_026620_010--Hb_002053_070 Hb_000976_090 Hb_000976_090 Hb_026620_010--Hb_000976_090 Hb_014214_010 Hb_014214_010 Hb_026620_010--Hb_014214_010 Hb_001808_010 Hb_001808_010 Hb_026620_010--Hb_001808_010 Hb_002400_370 Hb_002400_370 Hb_000184_140--Hb_002400_370 Hb_000184_140--Hb_002498_210 Hb_000184_140--Hb_007545_200 Hb_000184_140--Hb_020805_160 Hb_119600_020--Hb_007545_200 Hb_119600_020--Hb_020805_160 Hb_000172_150 Hb_000172_150 Hb_119600_020--Hb_000172_150 Hb_052802_010 Hb_052802_010 Hb_119600_020--Hb_052802_010 Hb_000270_530 Hb_000270_530 Hb_119600_020--Hb_000270_530 Hb_143933_010 Hb_143933_010 Hb_020805_160--Hb_143933_010 Hb_130739_010 Hb_130739_010 Hb_020805_160--Hb_130739_010 Hb_071079_060 Hb_071079_060 Hb_020805_160--Hb_071079_060 Hb_005001_010 Hb_005001_010 Hb_020805_160--Hb_005001_010 Hb_009851_040 Hb_009851_040 Hb_020805_160--Hb_009851_040 Hb_000343_170 Hb_000343_170 Hb_007545_200--Hb_000343_170 Hb_007545_200--Hb_052802_010 Hb_003906_030 Hb_003906_030 Hb_007545_200--Hb_003906_030 Hb_007545_200--Hb_020805_160 Hb_001810_050 Hb_001810_050 Hb_007545_200--Hb_001810_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.244417 0.469718 0 1.03177 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis