Hb_076233_040

Information

Type -
Description -
Location Contig76233: 15449-19037
Sequence    

Annotation

kegg
ID rcu:RCOM_1107030
description ATP synthase f1, gamma subunit, putative (EC:3.6.3.14)
nr
ID XP_012080377.1
description PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
swissprot
ID P26360
description ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2
trembl
ID A0A067K542
description ATP synthase subunit gamma OS=Jatropha curcas GN=JCGZ_11722 PE=3 SV=1
Gene Ontology
ID GO:0005618
description atp synthase subunit mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57312: 15590-17481 , PASA_asmbl_57313: 16212-16391
cDNA
(Sanger)
(ID:Location)		 031_F19.ab1: 15590-16380

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_076233_040 0.0 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
2 Hb_008841_020 0.0743575552 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
3 Hb_003126_070 0.075285263 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
4 Hb_000329_210 0.0765234345 - - Golgi snare 12 isoform 1 [Theobroma cacao]
5 Hb_010883_050 0.0781575329 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
6 Hb_006420_080 0.0785346784 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_005054_210 0.0810547506 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
8 Hb_000336_240 0.082863012 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
9 Hb_015778_010 0.0832012098 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]
10 Hb_002007_210 0.086085995 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
11 Hb_006478_020 0.0868846273 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
12 Hb_001353_010 0.0877067007 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
13 Hb_005765_050 0.0902981276 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
14 Hb_000599_250 0.0926833837 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
15 Hb_002284_230 0.0942850226 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
16 Hb_000363_360 0.0946742302 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
17 Hb_004889_010 0.0967150717 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
18 Hb_005306_180 0.0983319142 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
19 Hb_005305_110 0.0997867763 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
20 Hb_002014_020 0.1008665707 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_076233_040 Hb_076233_040 Hb_008841_020 Hb_008841_020 Hb_076233_040--Hb_008841_020 Hb_003126_070 Hb_003126_070 Hb_076233_040--Hb_003126_070 Hb_000329_210 Hb_000329_210 Hb_076233_040--Hb_000329_210 Hb_010883_050 Hb_010883_050 Hb_076233_040--Hb_010883_050 Hb_006420_080 Hb_006420_080 Hb_076233_040--Hb_006420_080 Hb_005054_210 Hb_005054_210 Hb_076233_040--Hb_005054_210 Hb_001189_070 Hb_001189_070 Hb_008841_020--Hb_001189_070 Hb_001828_150 Hb_001828_150 Hb_008841_020--Hb_001828_150 Hb_000599_250 Hb_000599_250 Hb_008841_020--Hb_000599_250 Hb_000200_020 Hb_000200_020 Hb_008841_020--Hb_000200_020 Hb_006478_020 Hb_006478_020 Hb_008841_020--Hb_006478_020 Hb_001489_080 Hb_001489_080 Hb_008841_020--Hb_001489_080 Hb_002284_230 Hb_002284_230 Hb_003126_070--Hb_002284_230 Hb_003291_020 Hb_003291_020 Hb_003126_070--Hb_003291_020 Hb_000300_430 Hb_000300_430 Hb_003126_070--Hb_000300_430 Hb_008232_010 Hb_008232_010 Hb_003126_070--Hb_008232_010 Hb_001123_160 Hb_001123_160 Hb_003126_070--Hb_001123_160 Hb_001307_030 Hb_001307_030 Hb_000329_210--Hb_001307_030 Hb_004257_010 Hb_004257_010 Hb_000329_210--Hb_004257_010 Hb_002184_090 Hb_002184_090 Hb_000329_210--Hb_002184_090 Hb_024128_020 Hb_024128_020 Hb_000329_210--Hb_024128_020 Hb_000617_200 Hb_000617_200 Hb_000329_210--Hb_000617_200 Hb_000436_130 Hb_000436_130 Hb_010883_050--Hb_000436_130 Hb_010883_050--Hb_006420_080 Hb_002007_210 Hb_002007_210 Hb_010883_050--Hb_002007_210 Hb_000336_240 Hb_000336_240 Hb_010883_050--Hb_000336_240 Hb_003697_040 Hb_003697_040 Hb_010883_050--Hb_003697_040 Hb_015778_010 Hb_015778_010 Hb_006420_080--Hb_015778_010 Hb_001902_140 Hb_001902_140 Hb_006420_080--Hb_001902_140 Hb_000982_080 Hb_000982_080 Hb_006420_080--Hb_000982_080 Hb_006420_080--Hb_001489_080 Hb_006420_080--Hb_003697_040 Hb_003622_040 Hb_003622_040 Hb_005054_210--Hb_003622_040 Hb_000174_210 Hb_000174_210 Hb_005054_210--Hb_000174_210 Hb_005765_050 Hb_005765_050 Hb_005054_210--Hb_005765_050 Hb_148121_040 Hb_148121_040 Hb_005054_210--Hb_148121_040 Hb_000045_310 Hb_000045_310 Hb_005054_210--Hb_000045_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.2704 33.1547 75.0869 147.521 39.5643 73.791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
151.944 129.977 134.13 90.0294 93.5036

CAGE analysis