Hb_076626_010

Information

Type -
Description -
Location Contig76626: 538-984
Sequence    

Annotation

kegg
ID rcu:RCOM_0837630
description hypothetical protein
nr
ID XP_002522476.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S907
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0837630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_076626_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010672_070 0.0473753946 - - hypothetical protein ZEAMMB73_607937, partial [Zea mays]
3 Hb_005590_020 0.0513772489 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
4 Hb_002999_050 0.0637510331 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
5 Hb_000933_160 0.0685796004 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
6 Hb_001158_230 0.0755508903 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
7 Hb_003893_050 0.0779464422 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
8 Hb_003203_040 0.0797993704 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
9 Hb_002687_170 0.0860419834 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
10 Hb_001863_400 0.0867036153 - - hypothetical protein EUGRSUZ_F03302 [Eucalyptus grandis]
11 Hb_007944_040 0.0881829493 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
12 Hb_003994_040 0.0903730913 - - -
13 Hb_001634_040 0.0913947598 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
14 Hb_007575_070 0.092295635 - - Histone H3.2 [Glycine soja]
15 Hb_001300_040 0.0932884867 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
16 Hb_000805_130 0.0943648471 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007497_030 0.0947538849 - - mutt domain protein, putative [Ricinus communis]
18 Hb_003455_040 0.0952384129 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
19 Hb_010672_060 0.0969474796 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
20 Hb_002259_070 0.0975474325 - - taz protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_076626_010 Hb_076626_010 Hb_010672_070 Hb_010672_070 Hb_076626_010--Hb_010672_070 Hb_005590_020 Hb_005590_020 Hb_076626_010--Hb_005590_020 Hb_002999_050 Hb_002999_050 Hb_076626_010--Hb_002999_050 Hb_000933_160 Hb_000933_160 Hb_076626_010--Hb_000933_160 Hb_001158_230 Hb_001158_230 Hb_076626_010--Hb_001158_230 Hb_003893_050 Hb_003893_050 Hb_076626_010--Hb_003893_050 Hb_010672_070--Hb_005590_020 Hb_010672_070--Hb_002999_050 Hb_003455_040 Hb_003455_040 Hb_010672_070--Hb_003455_040 Hb_003203_040 Hb_003203_040 Hb_010672_070--Hb_003203_040 Hb_010672_070--Hb_000933_160 Hb_007944_040 Hb_007944_040 Hb_005590_020--Hb_007944_040 Hb_001268_140 Hb_001268_140 Hb_005590_020--Hb_001268_140 Hb_005590_020--Hb_002999_050 Hb_000212_260 Hb_000212_260 Hb_005590_020--Hb_000212_260 Hb_003579_030 Hb_003579_030 Hb_002999_050--Hb_003579_030 Hb_001300_040 Hb_001300_040 Hb_002999_050--Hb_001300_040 Hb_002876_120 Hb_002876_120 Hb_002999_050--Hb_002876_120 Hb_000933_160--Hb_001158_230 Hb_002259_070 Hb_002259_070 Hb_000933_160--Hb_002259_070 Hb_002687_170 Hb_002687_170 Hb_000933_160--Hb_002687_170 Hb_000933_160--Hb_002999_050 Hb_001158_230--Hb_002687_170 Hb_019516_100 Hb_019516_100 Hb_001158_230--Hb_019516_100 Hb_001158_230--Hb_007944_040 Hb_005181_030 Hb_005181_030 Hb_001158_230--Hb_005181_030 Hb_005063_050 Hb_005063_050 Hb_003893_050--Hb_005063_050 Hb_000283_110 Hb_000283_110 Hb_003893_050--Hb_000283_110 Hb_002431_050 Hb_002431_050 Hb_003893_050--Hb_002431_050 Hb_003893_050--Hb_003203_040 Hb_010672_060 Hb_010672_060 Hb_003893_050--Hb_010672_060 Hb_000029_200 Hb_000029_200 Hb_003893_050--Hb_000029_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.10237 2.03055 4.73978 4.95476 7.62115 10.3267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.5159 42.3554 17.0641 4.34962 5.79926

CAGE analysis