Hb_076693_020

Information

Type -
Description -
Location Contig76693: 12045-18792
Sequence    

Annotation

kegg
ID crb:CARUB_v10021436mg
description hypothetical protein
nr
ID KDO87247.1
description hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
swissprot
ID P94248
description Bifunctional beta-D-glucosidase/beta-D-fucosidase OS=Bifidobacterium breve PE=1 SV=1
trembl
ID A0A067HH42
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0121812mg PE=3 SV=1
Gene Ontology
ID GO:0008422
description beta-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57429: 13930-14459 , PASA_asmbl_57430: 14628-15046 , PASA_asmbl_57432: 15787-16114 , PASA_asmbl_57433: 16453-18034 , PASA_asmbl_57434: 16677-18034
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_076693_020 0.0 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
2 Hb_000322_150 0.0482769666 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
3 Hb_045793_010 0.0622282395 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
4 Hb_000441_070 0.0647848924 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
5 Hb_023827_040 0.0716542079 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
6 Hb_000025_360 0.0730912043 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
7 Hb_006847_040 0.0776803716 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]
8 Hb_011491_010 0.0792591348 - - Protein YME1, putative [Ricinus communis]
9 Hb_002745_010 0.0810161556 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
10 Hb_000092_020 0.0815904732 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
11 Hb_012807_050 0.0826368504 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
12 Hb_000046_010 0.0832122429 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
13 Hb_001828_130 0.0853314725 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
14 Hb_000421_120 0.0859422622 - - PREDICTED: NEDD8-specific protease 1 [Jatropha curcas]
15 Hb_001021_170 0.0863271849 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
16 Hb_000140_070 0.0870049725 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
17 Hb_000592_090 0.0882929416 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Jatropha curcas]
18 Hb_000865_080 0.0888569018 - - arsenite-resistance protein, putative [Ricinus communis]
19 Hb_001718_090 0.089022637 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
20 Hb_005675_040 0.089184223 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_076693_020 Hb_076693_020 Hb_000322_150 Hb_000322_150 Hb_076693_020--Hb_000322_150 Hb_045793_010 Hb_045793_010 Hb_076693_020--Hb_045793_010 Hb_000441_070 Hb_000441_070 Hb_076693_020--Hb_000441_070 Hb_023827_040 Hb_023827_040 Hb_076693_020--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_076693_020--Hb_000025_360 Hb_006847_040 Hb_006847_040 Hb_076693_020--Hb_006847_040 Hb_000322_150--Hb_000441_070 Hb_002636_100 Hb_002636_100 Hb_000322_150--Hb_002636_100 Hb_000092_020 Hb_000092_020 Hb_000322_150--Hb_000092_020 Hb_011491_010 Hb_011491_010 Hb_000322_150--Hb_011491_010 Hb_001828_130 Hb_001828_130 Hb_000322_150--Hb_001828_130 Hb_045793_010--Hb_000025_360 Hb_000827_070 Hb_000827_070 Hb_045793_010--Hb_000827_070 Hb_045793_010--Hb_006847_040 Hb_001021_170 Hb_001021_170 Hb_045793_010--Hb_001021_170 Hb_000174_220 Hb_000174_220 Hb_045793_010--Hb_000174_220 Hb_000046_010 Hb_000046_010 Hb_000441_070--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000441_070--Hb_001718_090 Hb_004480_040 Hb_004480_040 Hb_000441_070--Hb_004480_040 Hb_000169_130 Hb_000169_130 Hb_000441_070--Hb_000169_130 Hb_023827_040--Hb_045793_010 Hb_000865_080 Hb_000865_080 Hb_023827_040--Hb_000865_080 Hb_023827_040--Hb_000025_360 Hb_000224_060 Hb_000224_060 Hb_023827_040--Hb_000224_060 Hb_001610_110 Hb_001610_110 Hb_023827_040--Hb_001610_110 Hb_002188_110 Hb_002188_110 Hb_000025_360--Hb_002188_110 Hb_000025_360--Hb_000046_010 Hb_000025_360--Hb_001718_090 Hb_183963_030 Hb_183963_030 Hb_000025_360--Hb_183963_030 Hb_000107_500 Hb_000107_500 Hb_000025_360--Hb_000107_500 Hb_006847_040--Hb_001021_170 Hb_006847_040--Hb_000025_360 Hb_006847_040--Hb_000174_220 Hb_015807_070 Hb_015807_070 Hb_006847_040--Hb_015807_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.29506 12.8523 3.26938 3.05335 7.34799 9.07119
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.8754 6.84455 5.67285 5.58017 3.19511

CAGE analysis