Hb_076778_010

Information

Type -
Description -
Location Contig76778: 323-820
Sequence    

Annotation

kegg
ID rcu:RCOM_0901430
description eukaryotic translation initiation factor 3 subunit, putative
nr
ID XP_002517675.1
description eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RVA6
description Eukaryotic translation initiation factor 3 subunit, putative OS=Ricinus communis GN=RCOM_0901430 PE=4 SV=1
Gene Ontology
ID GO:0005829
description eukaryotic translation initiation factor 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_076778_010 0.0 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
2 Hb_000796_160 0.0916738896 - - PREDICTED: nifU-like protein 1, chloroplastic [Jatropha curcas]
3 Hb_000506_110 0.1130582899 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Jatropha curcas]
4 Hb_000025_780 0.1180578844 - - PREDICTED: sanguinarine reductase [Jatropha curcas]
5 Hb_003462_180 0.1217104606 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
6 Hb_002435_100 0.1235431447 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Jatropha curcas]
7 Hb_000023_360 0.1250232591 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
8 Hb_005511_140 0.1265668093 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
9 Hb_005211_180 0.1266981394 - - Transmembrane protein TPARL, putative [Ricinus communis]
10 Hb_001558_080 0.1280955772 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000349_270 0.1297737895 - - PREDICTED: uncharacterized protein ycf49 isoform X1 [Jatropha curcas]
12 Hb_000164_100 0.1310986003 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
13 Hb_029622_120 0.133613789 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
14 Hb_014497_100 0.1340054579 - - PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
15 Hb_113853_010 0.1340264991 - - 50S ribosomal protein L2, putative [Ricinus communis]
16 Hb_001587_180 0.134102267 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
17 Hb_005494_010 0.1348540655 - - catalytic, putative [Ricinus communis]
18 Hb_092462_020 0.1350289208 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
19 Hb_002205_230 0.1360293173 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
20 Hb_001410_070 0.1361855101 - - hypothetical protein JCGZ_20421 [Jatropha curcas]

Gene co-expression network

sample Hb_076778_010 Hb_076778_010 Hb_000796_160 Hb_000796_160 Hb_076778_010--Hb_000796_160 Hb_000506_110 Hb_000506_110 Hb_076778_010--Hb_000506_110 Hb_000025_780 Hb_000025_780 Hb_076778_010--Hb_000025_780 Hb_003462_180 Hb_003462_180 Hb_076778_010--Hb_003462_180 Hb_002435_100 Hb_002435_100 Hb_076778_010--Hb_002435_100 Hb_000023_360 Hb_000023_360 Hb_076778_010--Hb_000023_360 Hb_000796_160--Hb_000025_780 Hb_001935_100 Hb_001935_100 Hb_000796_160--Hb_001935_100 Hb_001410_070 Hb_001410_070 Hb_000796_160--Hb_001410_070 Hb_000487_260 Hb_000487_260 Hb_000796_160--Hb_000487_260 Hb_000230_400 Hb_000230_400 Hb_000796_160--Hb_000230_400 Hb_000506_110--Hb_003462_180 Hb_002259_170 Hb_002259_170 Hb_000506_110--Hb_002259_170 Hb_001511_090 Hb_001511_090 Hb_000506_110--Hb_001511_090 Hb_000160_140 Hb_000160_140 Hb_000506_110--Hb_000160_140 Hb_008120_040 Hb_008120_040 Hb_000506_110--Hb_008120_040 Hb_001269_370 Hb_001269_370 Hb_000506_110--Hb_001269_370 Hb_000227_170 Hb_000227_170 Hb_000025_780--Hb_000227_170 Hb_000025_780--Hb_001410_070 Hb_000025_780--Hb_001935_100 Hb_007533_010 Hb_007533_010 Hb_000025_780--Hb_007533_010 Hb_005494_010 Hb_005494_010 Hb_000025_780--Hb_005494_010 Hb_003462_180--Hb_000023_360 Hb_001629_090 Hb_001629_090 Hb_003462_180--Hb_001629_090 Hb_005656_170 Hb_005656_170 Hb_003462_180--Hb_005656_170 Hb_003462_180--Hb_001511_090 Hb_049575_010 Hb_049575_010 Hb_003462_180--Hb_049575_010 Hb_007254_020 Hb_007254_020 Hb_002435_100--Hb_007254_020 Hb_000292_100 Hb_000292_100 Hb_002435_100--Hb_000292_100 Hb_000230_460 Hb_000230_460 Hb_002435_100--Hb_000230_460 Hb_000035_090 Hb_000035_090 Hb_002435_100--Hb_000035_090 Hb_002435_100--Hb_000230_400 Hb_000282_090 Hb_000282_090 Hb_002435_100--Hb_000282_090 Hb_073973_090 Hb_073973_090 Hb_000023_360--Hb_073973_090 Hb_005511_140 Hb_005511_140 Hb_000023_360--Hb_005511_140 Hb_000086_080 Hb_000086_080 Hb_000023_360--Hb_000086_080 Hb_001675_140 Hb_001675_140 Hb_000023_360--Hb_001675_140 Hb_062226_060 Hb_062226_060 Hb_000023_360--Hb_062226_060 Hb_158530_020 Hb_158530_020 Hb_000023_360--Hb_158530_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.23819 0.675617 0.884221 0.306248 0.171509 0.292914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.647433 0.678112 0.26776 0.293067 0.881108

CAGE analysis