Hb_076895_020

Information

Type -
Description -
Location Contig76895: 19874-23253
Sequence    

Annotation

kegg
ID vvi:100261069
description probable LRR receptor-like serine/threonine-protein kinase At4g08850
nr
ID XP_012067862.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A067KYY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15779 PE=4 SV=1
Gene Ontology
ID GO:0016740
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57544: 20191-20307 , PASA_asmbl_57545: 21898-22173
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_076895_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
2 Hb_000539_080 0.0457023833 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
3 Hb_002110_270 0.0629179582 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
4 Hb_006006_070 0.0648870917 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_027141_010 0.0666967003 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
6 Hb_000984_080 0.0750627727 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
7 Hb_000758_030 0.0769433826 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
8 Hb_000140_260 0.0829185154 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
9 Hb_002232_400 0.0874822993 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
10 Hb_000081_020 0.0897828317 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
11 Hb_000948_070 0.0934286829 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
12 Hb_004200_040 0.0973955465 - - laccase, putative [Ricinus communis]
13 Hb_000441_170 0.0980314271 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
14 Hb_002900_070 0.1031249012 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000976_020 0.1039935035 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
16 Hb_020332_040 0.1083072467 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
17 Hb_002232_370 0.1088423353 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
18 Hb_002965_020 0.1092021548 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
19 Hb_000438_190 0.1092391453 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
20 Hb_000205_210 0.1094120687 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_076895_020 Hb_076895_020 Hb_000539_080 Hb_000539_080 Hb_076895_020--Hb_000539_080 Hb_002110_270 Hb_002110_270 Hb_076895_020--Hb_002110_270 Hb_006006_070 Hb_006006_070 Hb_076895_020--Hb_006006_070 Hb_027141_010 Hb_027141_010 Hb_076895_020--Hb_027141_010 Hb_000984_080 Hb_000984_080 Hb_076895_020--Hb_000984_080 Hb_000758_030 Hb_000758_030 Hb_076895_020--Hb_000758_030 Hb_000081_020 Hb_000081_020 Hb_000539_080--Hb_000081_020 Hb_000948_070 Hb_000948_070 Hb_000539_080--Hb_000948_070 Hb_000539_080--Hb_002110_270 Hb_000539_080--Hb_006006_070 Hb_000539_080--Hb_027141_010 Hb_002110_270--Hb_006006_070 Hb_002110_270--Hb_000758_030 Hb_002110_270--Hb_000984_080 Hb_002900_070 Hb_002900_070 Hb_002110_270--Hb_002900_070 Hb_006006_070--Hb_000758_030 Hb_002232_400 Hb_002232_400 Hb_006006_070--Hb_002232_400 Hb_000441_170 Hb_000441_170 Hb_006006_070--Hb_000441_170 Hb_000140_260 Hb_000140_260 Hb_027141_010--Hb_000140_260 Hb_020332_040 Hb_020332_040 Hb_027141_010--Hb_020332_040 Hb_004200_040 Hb_004200_040 Hb_027141_010--Hb_004200_040 Hb_000205_210 Hb_000205_210 Hb_027141_010--Hb_000205_210 Hb_000984_080--Hb_000140_260 Hb_000984_080--Hb_000539_080 Hb_000984_080--Hb_000758_030 Hb_000984_080--Hb_006006_070 Hb_008225_080 Hb_008225_080 Hb_000758_030--Hb_008225_080 Hb_000976_020 Hb_000976_020 Hb_000758_030--Hb_000976_020 Hb_000758_030--Hb_000539_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00846913 2.09039 0.459726 1.45076 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 11.1107 0.385251

CAGE analysis