Hb_077054_010

Information

Type -
Description -
Location Contig77054: 1-522
Sequence    

Annotation

kegg
ID rcu:RCOM_0265270
description S-locus-specific glycoprotein S13 precursor, putative (EC:2.7.10.2)
nr
ID XP_012084625.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID B9SW97
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_0265270 PE=3 SV=1
Gene Ontology
ID GO:0004672
description s-locus-specific glycoprotein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_077054_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
2 Hb_010727_010 0.2150324344 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
3 Hb_081745_010 0.215288863 - - hypothetical protein CISIN_1g030953mg [Citrus sinensis]
4 Hb_001016_110 0.2266660262 desease resistance Gene Name: Lectin_legB hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
5 Hb_000025_340 0.2267184184 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Jatropha curcas]
6 Hb_087596_010 0.2276785857 - - PREDICTED: disease resistance protein RPS4-like [Jatropha curcas]
7 Hb_073395_010 0.2290237648 - - -
8 Hb_035398_010 0.2294033254 - - hypothetical protein JCGZ_13029 [Jatropha curcas]
9 Hb_037767_010 0.2326177402 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
10 Hb_002234_190 0.233404256 - - PREDICTED: putative non-specific lipid-transfer protein 14 [Jatropha curcas]
11 Hb_005916_030 0.2399791402 - - PREDICTED: uncharacterized protein At2g29880-like [Jatropha curcas]
12 Hb_001183_010 0.2454634096 - - -
13 Hb_000777_030 0.2471841256 - - histone h2a, putative [Ricinus communis]
14 Hb_175069_010 0.2488580638 - - hypothetical protein POPTR_0002s210401g, partial [Populus trichocarpa]
15 Hb_000009_180 0.2492037589 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
16 Hb_002272_080 0.252828162 - - -
17 Hb_137461_010 0.2531447986 - - hypothetical protein POPTR_0011s03680g [Populus trichocarpa]
18 Hb_141918_010 0.2533808476 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
19 Hb_063480_020 0.2561013179 - - unnamed protein product [Vitis vinifera]
20 Hb_013394_080 0.2561654269 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_077054_010 Hb_077054_010 Hb_010727_010 Hb_010727_010 Hb_077054_010--Hb_010727_010 Hb_081745_010 Hb_081745_010 Hb_077054_010--Hb_081745_010 Hb_001016_110 Hb_001016_110 Hb_077054_010--Hb_001016_110 Hb_000025_340 Hb_000025_340 Hb_077054_010--Hb_000025_340 Hb_087596_010 Hb_087596_010 Hb_077054_010--Hb_087596_010 Hb_073395_010 Hb_073395_010 Hb_077054_010--Hb_073395_010 Hb_001183_010 Hb_001183_010 Hb_010727_010--Hb_001183_010 Hb_010727_010--Hb_000025_340 Hb_010727_010--Hb_081745_010 Hb_141918_010 Hb_141918_010 Hb_010727_010--Hb_141918_010 Hb_000087_050 Hb_000087_050 Hb_010727_010--Hb_000087_050 Hb_002272_080 Hb_002272_080 Hb_010727_010--Hb_002272_080 Hb_081745_010--Hb_001183_010 Hb_081745_010--Hb_141918_010 Hb_002234_190 Hb_002234_190 Hb_081745_010--Hb_002234_190 Hb_081745_010--Hb_073395_010 Hb_164945_040 Hb_164945_040 Hb_081745_010--Hb_164945_040 Hb_004705_140 Hb_004705_140 Hb_001016_110--Hb_004705_140 Hb_000009_570 Hb_000009_570 Hb_001016_110--Hb_000009_570 Hb_000016_100 Hb_000016_100 Hb_001016_110--Hb_000016_100 Hb_009838_050 Hb_009838_050 Hb_001016_110--Hb_009838_050 Hb_000227_060 Hb_000227_060 Hb_001016_110--Hb_000227_060 Hb_001514_130 Hb_001514_130 Hb_001016_110--Hb_001514_130 Hb_000592_090 Hb_000592_090 Hb_000025_340--Hb_000592_090 Hb_003498_090 Hb_003498_090 Hb_000025_340--Hb_003498_090 Hb_000025_340--Hb_002272_080 Hb_000025_340--Hb_009838_050 Hb_000530_010 Hb_000530_010 Hb_000025_340--Hb_000530_010 Hb_001817_160 Hb_001817_160 Hb_000025_340--Hb_001817_160 Hb_000575_150 Hb_000575_150 Hb_087596_010--Hb_000575_150 Hb_000777_030 Hb_000777_030 Hb_087596_010--Hb_000777_030 Hb_004230_040 Hb_004230_040 Hb_087596_010--Hb_004230_040 Hb_087596_010--Hb_000016_100 Hb_001969_090 Hb_001969_090 Hb_087596_010--Hb_001969_090 Hb_000914_090 Hb_000914_090 Hb_087596_010--Hb_000914_090 Hb_073395_010--Hb_002234_190 Hb_073395_010--Hb_000025_340 Hb_002876_290 Hb_002876_290 Hb_073395_010--Hb_002876_290 Hb_001902_190 Hb_001902_190 Hb_073395_010--Hb_001902_190 Hb_145629_010 Hb_145629_010 Hb_073395_010--Hb_145629_010 Hb_005143_040 Hb_005143_040 Hb_073395_010--Hb_005143_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0535774 2.48154 0.167182 0.307664 0.413896 2.45904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.750976 1.37673 0.672072 1.26249 0.185543

CAGE analysis