Hb_077151_010

Information

Type -
Description -
Location Contig77151: 386-2221
Sequence    

Annotation

kegg
ID tcc:TCM_042938
description Ankyrin repeat family protein
nr
ID BAG15869.1
description ankyrin repeat protein [Bruguiera gymnorhiza]
swissprot
ID O60733
description 85/88 kDa calcium-independent phospholipase A2 OS=Homo sapiens GN=PLA2G6 PE=1 SV=2
trembl
ID B1Q4U3
description Ankyrin repeat protein OS=Bruguiera gymnorhiza PE=2 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57670: 1615-1887
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_077151_010 0.0 - - ankyrin repeat protein [Bruguiera gymnorhiza]
2 Hb_002111_010 0.0645263868 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
3 Hb_005678_030 0.0728843298 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
4 Hb_000441_080 0.0772780454 - - calmodulin binding protein, putative [Ricinus communis]
5 Hb_003073_030 0.0803012303 - - conserved hypothetical protein [Ricinus communis]
6 Hb_015807_020 0.0946019595 - - gibberellin 20-oxidase, putative [Ricinus communis]
7 Hb_001579_050 0.0946751029 - - alcohol dehydrogenase, putative [Ricinus communis]
8 Hb_000199_090 0.0968827826 - - Tetrapyrrole-binding family protein [Populus trichocarpa]
9 Hb_168319_040 0.1006132601 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
10 Hb_040245_010 0.1045056149 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
11 Hb_001856_290 0.1072183109 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
12 Hb_014510_030 0.1072370938 - - hypothetical protein VITISV_027576 [Vitis vinifera]
13 Hb_000139_030 0.1074311976 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
14 Hb_000858_050 0.1129337077 - - kinase, putative [Ricinus communis]
15 Hb_000135_080 0.1161048027 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
16 Hb_054865_040 0.1230200256 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
17 Hb_004146_030 0.1251862886 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_004242_200 0.127753495 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
19 Hb_048755_030 0.1285308758 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_007101_090 0.1290397019 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]

Gene co-expression network

sample Hb_077151_010 Hb_077151_010 Hb_002111_010 Hb_002111_010 Hb_077151_010--Hb_002111_010 Hb_005678_030 Hb_005678_030 Hb_077151_010--Hb_005678_030 Hb_000441_080 Hb_000441_080 Hb_077151_010--Hb_000441_080 Hb_003073_030 Hb_003073_030 Hb_077151_010--Hb_003073_030 Hb_015807_020 Hb_015807_020 Hb_077151_010--Hb_015807_020 Hb_001579_050 Hb_001579_050 Hb_077151_010--Hb_001579_050 Hb_002111_010--Hb_000441_080 Hb_000011_440 Hb_000011_440 Hb_002111_010--Hb_000011_440 Hb_048755_030 Hb_048755_030 Hb_002111_010--Hb_048755_030 Hb_002111_010--Hb_001579_050 Hb_000139_030 Hb_000139_030 Hb_002111_010--Hb_000139_030 Hb_000135_080 Hb_000135_080 Hb_005678_030--Hb_000135_080 Hb_000476_030 Hb_000476_030 Hb_005678_030--Hb_000476_030 Hb_168319_040 Hb_168319_040 Hb_005678_030--Hb_168319_040 Hb_006455_020 Hb_006455_020 Hb_005678_030--Hb_006455_020 Hb_005678_030--Hb_000441_080 Hb_000441_080--Hb_168319_040 Hb_000441_080--Hb_000139_030 Hb_000441_080--Hb_000011_440 Hb_000081_110 Hb_000081_110 Hb_000441_080--Hb_000081_110 Hb_040245_010 Hb_040245_010 Hb_003073_030--Hb_040245_010 Hb_014510_030 Hb_014510_030 Hb_003073_030--Hb_014510_030 Hb_000415_080 Hb_000415_080 Hb_003073_030--Hb_000415_080 Hb_000199_090 Hb_000199_090 Hb_003073_030--Hb_000199_090 Hb_000627_110 Hb_000627_110 Hb_003073_030--Hb_000627_110 Hb_015807_020--Hb_001579_050 Hb_000858_050 Hb_000858_050 Hb_015807_020--Hb_000858_050 Hb_001289_050 Hb_001289_050 Hb_015807_020--Hb_001289_050 Hb_004459_050 Hb_004459_050 Hb_015807_020--Hb_004459_050 Hb_000282_100 Hb_000282_100 Hb_015807_020--Hb_000282_100 Hb_001517_060 Hb_001517_060 Hb_001579_050--Hb_001517_060 Hb_001579_050--Hb_001289_050 Hb_001579_050--Hb_000139_030 Hb_001579_050--Hb_000081_110 Hb_002534_090 Hb_002534_090 Hb_001579_050--Hb_002534_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0555463 0.185115 0.139605 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.119984 1.251

CAGE analysis