Hb_077211_010

Information

Type -
Description -
Location Contig77211: 35-1102
Sequence    

Annotation

kegg
ID rcu:RCOM_0920340
description RNA lariat debranching enzyme, putative (EC:1.11.1.7)
nr
ID XP_012077502.1
description PREDICTED: lariat debranching enzyme-like [Jatropha curcas]
swissprot
ID Q94K01
description Lariat debranching enzyme OS=Arabidopsis thaliana GN=DBR1 PE=2 SV=1
trembl
ID B9RNS1
description Peroxidase OS=Ricinus communis GN=RCOM_0920340 PE=3 SV=1
Gene Ontology
ID GO:0016787
description lariat debranching enzyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_077211_010 0.0 - - PREDICTED: lariat debranching enzyme-like [Jatropha curcas]
2 Hb_130134_030 0.1675614016 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
3 Hb_183980_010 0.1758209302 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
4 Hb_007137_060 0.2015421629 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
5 Hb_006960_030 0.201618662 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44-like [Jatropha curcas]
6 Hb_003297_020 0.2016460296 - - unknown [Populus trichocarpa x Populus deltoides]
7 Hb_001935_190 0.2017112203 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
8 Hb_000215_260 0.2053244775 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
9 Hb_000441_160 0.2054503536 - - ARF GTPase activator, putative [Ricinus communis]
10 Hb_001450_100 0.2065909367 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
11 Hb_023327_030 0.2080062121 - - osmotin-like protein [Hevea brasiliensis]
12 Hb_070385_010 0.2099514782 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
13 Hb_001158_180 0.2119219598 - - -
14 Hb_101020_010 0.2139767068 - - -
15 Hb_000256_210 0.2163382402 - - PREDICTED: 40S ribosomal protein S11-like [Phoenix dactylifera]
16 Hb_003243_020 0.2198667637 - - PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
17 Hb_002159_030 0.2239165346 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
18 Hb_010189_010 0.2254760806 - - -
19 Hb_061256_030 0.2307221473 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
20 Hb_035360_010 0.2325357244 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_077211_010 Hb_077211_010 Hb_130134_030 Hb_130134_030 Hb_077211_010--Hb_130134_030 Hb_183980_010 Hb_183980_010 Hb_077211_010--Hb_183980_010 Hb_007137_060 Hb_007137_060 Hb_077211_010--Hb_007137_060 Hb_006960_030 Hb_006960_030 Hb_077211_010--Hb_006960_030 Hb_003297_020 Hb_003297_020 Hb_077211_010--Hb_003297_020 Hb_001935_190 Hb_001935_190 Hb_077211_010--Hb_001935_190 Hb_130134_020 Hb_130134_020 Hb_130134_030--Hb_130134_020 Hb_178041_010 Hb_178041_010 Hb_130134_030--Hb_178041_010 Hb_088428_010 Hb_088428_010 Hb_130134_030--Hb_088428_010 Hb_003376_070 Hb_003376_070 Hb_130134_030--Hb_003376_070 Hb_121467_010 Hb_121467_010 Hb_130134_030--Hb_121467_010 Hb_000125_040 Hb_000125_040 Hb_183980_010--Hb_000125_040 Hb_176117_010 Hb_176117_010 Hb_183980_010--Hb_176117_010 Hb_000200_040 Hb_000200_040 Hb_183980_010--Hb_000200_040 Hb_023327_030 Hb_023327_030 Hb_183980_010--Hb_023327_030 Hb_001582_030 Hb_001582_030 Hb_183980_010--Hb_001582_030 Hb_001442_030 Hb_001442_030 Hb_007137_060--Hb_001442_030 Hb_002235_120 Hb_002235_120 Hb_007137_060--Hb_002235_120 Hb_004994_340 Hb_004994_340 Hb_007137_060--Hb_004994_340 Hb_007137_060--Hb_130134_030 Hb_020805_010 Hb_020805_010 Hb_007137_060--Hb_020805_010 Hb_000005_320 Hb_000005_320 Hb_006960_030--Hb_000005_320 Hb_008406_130 Hb_008406_130 Hb_006960_030--Hb_008406_130 Hb_061256_030 Hb_061256_030 Hb_006960_030--Hb_061256_030 Hb_003673_020 Hb_003673_020 Hb_006960_030--Hb_003673_020 Hb_101020_010 Hb_101020_010 Hb_006960_030--Hb_101020_010 Hb_000252_090 Hb_000252_090 Hb_006960_030--Hb_000252_090 Hb_070385_010 Hb_070385_010 Hb_003297_020--Hb_070385_010 Hb_007136_020 Hb_007136_020 Hb_003297_020--Hb_007136_020 Hb_003297_020--Hb_101020_010 Hb_002249_110 Hb_002249_110 Hb_003297_020--Hb_002249_110 Hb_124961_010 Hb_124961_010 Hb_003297_020--Hb_124961_010 Hb_001767_120 Hb_001767_120 Hb_003297_020--Hb_001767_120 Hb_120662_010 Hb_120662_010 Hb_001935_190--Hb_120662_010 Hb_001916_120 Hb_001916_120 Hb_001935_190--Hb_001916_120 Hb_001916_060 Hb_001916_060 Hb_001935_190--Hb_001916_060 Hb_000329_420 Hb_000329_420 Hb_001935_190--Hb_000329_420 Hb_000792_110 Hb_000792_110 Hb_001935_190--Hb_000792_110 Hb_001935_190--Hb_000252_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.35513 1.96848 2.68827 3.0763 11.3148 19.2868
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.146731 0.691575 2.12331 0.67446 0

CAGE analysis