Hb_077242_020

Information

Type -
Description -
Location Contig77242: 16439-17629
Sequence    

Annotation

kegg
ID rcu:RCOM_Mp37
description rps4; ribosomal protein S4
nr
ID YP_004237282.1
description ribosomal protein S4 (mitochondrion) [Ricinus communis]
swissprot
ID Q31708
description Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana GN=RPS4 PE=2 SV=2
trembl
ID E9P2C0
description Ribosomal protein S4 OS=Ricinus communis GN=rps4 PE=4 SV=1
Gene Ontology
ID GO:0005739
description ribosomal protein s4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_077242_020 0.0 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
2 Hb_041813_030 0.0843292776 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
3 Hb_006040_030 0.0954839309 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
4 Hb_042463_070 0.096841141 - - 60S ribosomal protein L16, putative [Ricinus communis]
5 Hb_079902_010 0.0986756969 - - cytochrome c biogenesis B (mitochondrion) [Hevea brasiliensis]
6 Hb_101462_010 0.1037263005 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
7 Hb_156746_010 0.1102717317 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
8 Hb_007645_060 0.1123279864 - - cytochrome f [Hevea brasiliensis]
9 Hb_003963_030 0.1155304127 - - psbB [Jatropha curcas]
10 Hb_151890_020 0.1159184026 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
11 Hb_001508_010 0.1184300656 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006040_020 0.1197336683 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
13 Hb_000879_260 0.1200132758 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
14 Hb_007645_050 0.1201662641 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
15 Hb_006040_010 0.1203966291 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
16 Hb_000336_130 0.1222085853 - - Triacylglycerol lipase 2 precursor, putative [Ricinus communis]
17 Hb_000123_070 0.1233792372 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
18 Hb_000373_140 0.1235459345 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
19 Hb_179142_010 0.1245764409 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
20 Hb_001490_020 0.1249452125 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]

Gene co-expression network

sample Hb_077242_020 Hb_077242_020 Hb_041813_030 Hb_041813_030 Hb_077242_020--Hb_041813_030 Hb_006040_030 Hb_006040_030 Hb_077242_020--Hb_006040_030 Hb_042463_070 Hb_042463_070 Hb_077242_020--Hb_042463_070 Hb_079902_010 Hb_079902_010 Hb_077242_020--Hb_079902_010 Hb_101462_010 Hb_101462_010 Hb_077242_020--Hb_101462_010 Hb_156746_010 Hb_156746_010 Hb_077242_020--Hb_156746_010 Hb_041813_030--Hb_042463_070 Hb_041813_030--Hb_156746_010 Hb_041813_030--Hb_006040_030 Hb_062192_030 Hb_062192_030 Hb_041813_030--Hb_062192_030 Hb_013420_050 Hb_013420_050 Hb_041813_030--Hb_013420_050 Hb_006040_030--Hb_156746_010 Hb_006040_010 Hb_006040_010 Hb_006040_030--Hb_006040_010 Hb_006040_020 Hb_006040_020 Hb_006040_030--Hb_006040_020 Hb_012163_050 Hb_012163_050 Hb_006040_030--Hb_012163_050 Hb_042463_070--Hb_156746_010 Hb_042463_070--Hb_013420_050 Hb_042463_070--Hb_006040_030 Hb_042463_070--Hb_012163_050 Hb_001508_010 Hb_001508_010 Hb_079902_010--Hb_001508_010 Hb_000373_140 Hb_000373_140 Hb_079902_010--Hb_000373_140 Hb_079902_010--Hb_101462_010 Hb_002395_040 Hb_002395_040 Hb_079902_010--Hb_002395_040 Hb_004208_040 Hb_004208_040 Hb_079902_010--Hb_004208_040 Hb_101462_010--Hb_000373_140 Hb_000123_070 Hb_000123_070 Hb_101462_010--Hb_000123_070 Hb_101462_010--Hb_004208_040 Hb_004987_040 Hb_004987_040 Hb_101462_010--Hb_004987_040 Hb_004375_020 Hb_004375_020 Hb_101462_010--Hb_004375_020 Hb_156746_010--Hb_013420_050 Hb_156746_010--Hb_012163_050 Hb_013420_020 Hb_013420_020 Hb_156746_010--Hb_013420_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.035844 0.241435 0.214827 0.268645 0.052728 0.0722564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0598815 0.103213 10.4587

CAGE analysis