Hb_077562_010

Information

Type -
Description -
Location Contig77562: 10113-12688
Sequence    

Annotation

kegg
ID rcu:RCOM_0621350
description Auxin-induced protein 5NG4, putative
nr
ID XP_012068727.1
description PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
swissprot
ID Q9FL41
description WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1
trembl
ID A0A067KWI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24570 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at5g07050-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57767: 10171-11475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_077562_010 0.0 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
2 Hb_000318_320 0.0998821442 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
3 Hb_004607_180 0.1012604579 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000840_230 0.1112743656 - - RING-H2 finger protein ATL1L, putative [Ricinus communis]
5 Hb_002639_090 0.1121962711 - - hypothetical protein JCGZ_08134 [Jatropha curcas]
6 Hb_001998_130 0.1142409083 transcription factor TF Family: WRKY WRKY transcription factor 35 family protein [Populus trichocarpa]
7 Hb_047725_010 0.124833628 - - ceramidase, putative [Ricinus communis]
8 Hb_013862_010 0.1321637512 - - PREDICTED: uncharacterized protein LOC105650642 [Jatropha curcas]
9 Hb_091826_010 0.1365235402 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
10 Hb_000984_120 0.136973225 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_007007_110 0.1404595063 - - hypothetical protein JCGZ_14479 [Jatropha curcas]
12 Hb_003031_070 0.1426491658 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Jatropha curcas]
13 Hb_000072_310 0.1456459493 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]
14 Hb_007235_040 0.1456963378 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_010028_010 0.1459681954 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
16 Hb_000206_280 0.1463471028 - - Uncharacterized protein TCM_031897 [Theobroma cacao]
17 Hb_023502_010 0.14668816 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
18 Hb_004089_010 0.148656391 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
19 Hb_085910_010 0.1520750758 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
20 Hb_162047_010 0.1535091493 - - PREDICTED: protein indeterminate-domain 16 [Jatropha curcas]

Gene co-expression network

sample Hb_077562_010 Hb_077562_010 Hb_000318_320 Hb_000318_320 Hb_077562_010--Hb_000318_320 Hb_004607_180 Hb_004607_180 Hb_077562_010--Hb_004607_180 Hb_000840_230 Hb_000840_230 Hb_077562_010--Hb_000840_230 Hb_002639_090 Hb_002639_090 Hb_077562_010--Hb_002639_090 Hb_001998_130 Hb_001998_130 Hb_077562_010--Hb_001998_130 Hb_047725_010 Hb_047725_010 Hb_077562_010--Hb_047725_010 Hb_002107_080 Hb_002107_080 Hb_000318_320--Hb_002107_080 Hb_000984_120 Hb_000984_120 Hb_000318_320--Hb_000984_120 Hb_007007_110 Hb_007007_110 Hb_000318_320--Hb_007007_110 Hb_002078_210 Hb_002078_210 Hb_000318_320--Hb_002078_210 Hb_011609_060 Hb_011609_060 Hb_000318_320--Hb_011609_060 Hb_004607_180--Hb_000318_320 Hb_004607_180--Hb_002639_090 Hb_087468_010 Hb_087468_010 Hb_004607_180--Hb_087468_010 Hb_017434_020 Hb_017434_020 Hb_004607_180--Hb_017434_020 Hb_001529_020 Hb_001529_020 Hb_004607_180--Hb_001529_020 Hb_000840_230--Hb_002639_090 Hb_000072_310 Hb_000072_310 Hb_000840_230--Hb_000072_310 Hb_000840_230--Hb_000318_320 Hb_005588_140 Hb_005588_140 Hb_000840_230--Hb_005588_140 Hb_009393_010 Hb_009393_010 Hb_000840_230--Hb_009393_010 Hb_002639_090--Hb_000072_310 Hb_052530_030 Hb_052530_030 Hb_002639_090--Hb_052530_030 Hb_002639_090--Hb_009393_010 Hb_011805_060 Hb_011805_060 Hb_002639_090--Hb_011805_060 Hb_013862_010 Hb_013862_010 Hb_001998_130--Hb_013862_010 Hb_004089_010 Hb_004089_010 Hb_001998_130--Hb_004089_010 Hb_023502_010 Hb_023502_010 Hb_001998_130--Hb_023502_010 Hb_000206_280 Hb_000206_280 Hb_001998_130--Hb_000206_280 Hb_091826_010 Hb_091826_010 Hb_001998_130--Hb_091826_010 Hb_003031_070 Hb_003031_070 Hb_047725_010--Hb_003031_070 Hb_047725_010--Hb_007007_110 Hb_047725_010--Hb_000318_320 Hb_009787_020 Hb_009787_020 Hb_047725_010--Hb_009787_020 Hb_004659_110 Hb_004659_110 Hb_047725_010--Hb_004659_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0390932 26.7256 0.106079 11.6087 0.0489119 0.173975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.713532 0.582792

CAGE analysis