Hb_077562_050

Information

Type transcription factor
Description TF Family: NF-YC
Location Contig77562: 34606-39688
Sequence    

Annotation

kegg
ID rcu:RCOM_0621420
description negative cofactor 2 transcriptional co-repressor, putative
nr
ID XP_012068734.1
description PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
swissprot
ID A0JPP1
description Dr1-associated corepressor OS=Rattus norvegicus GN=Drap1 PE=2 SV=1
trembl
ID A0A067L7U3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24574 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dr1-associated corepressor homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57776: 34653-39587
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_077562_050 0.0 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
2 Hb_000289_060 0.0626594932 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
3 Hb_000538_270 0.0642521063 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
4 Hb_000010_400 0.0671214235 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
5 Hb_000453_170 0.0721648865 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_027295_050 0.0757924889 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Jatropha curcas]
7 Hb_004155_010 0.0777429699 - - PREDICTED: la protein 1 [Jatropha curcas]
8 Hb_004221_020 0.0791713148 - - protein binding protein, putative [Ricinus communis]
9 Hb_000201_100 0.0797276302 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
10 Hb_000096_070 0.0802728482 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
11 Hb_002499_040 0.0806824258 - - PREDICTED: probable serine/threonine-protein kinase GCN2 isoform X2 [Jatropha curcas]
12 Hb_002686_030 0.0825626803 - - PREDICTED: uncharacterized protein LOC105632635 isoform X1 [Jatropha curcas]
13 Hb_001926_030 0.082802194 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
14 Hb_000732_140 0.0838617482 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
15 Hb_000827_070 0.0858597953 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
16 Hb_004055_150 0.0868936695 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007416_180 0.0871112282 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
18 Hb_002888_030 0.0871837634 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
19 Hb_005137_050 0.0874409387 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
20 Hb_001595_030 0.0875500072 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_077562_050 Hb_077562_050 Hb_000289_060 Hb_000289_060 Hb_077562_050--Hb_000289_060 Hb_000538_270 Hb_000538_270 Hb_077562_050--Hb_000538_270 Hb_000010_400 Hb_000010_400 Hb_077562_050--Hb_000010_400 Hb_000453_170 Hb_000453_170 Hb_077562_050--Hb_000453_170 Hb_027295_050 Hb_027295_050 Hb_077562_050--Hb_027295_050 Hb_004155_010 Hb_004155_010 Hb_077562_050--Hb_004155_010 Hb_004221_020 Hb_004221_020 Hb_000289_060--Hb_004221_020 Hb_001248_060 Hb_001248_060 Hb_000289_060--Hb_001248_060 Hb_000289_060--Hb_000538_270 Hb_002686_030 Hb_002686_030 Hb_000289_060--Hb_002686_030 Hb_010618_010 Hb_010618_010 Hb_000289_060--Hb_010618_010 Hb_007416_180 Hb_007416_180 Hb_000538_270--Hb_007416_180 Hb_000757_060 Hb_000757_060 Hb_000538_270--Hb_000757_060 Hb_000538_270--Hb_002686_030 Hb_001005_190 Hb_001005_190 Hb_000538_270--Hb_001005_190 Hb_001157_040 Hb_001157_040 Hb_000538_270--Hb_001157_040 Hb_011995_010 Hb_011995_010 Hb_000010_400--Hb_011995_010 Hb_007813_040 Hb_007813_040 Hb_000010_400--Hb_007813_040 Hb_001926_030 Hb_001926_030 Hb_000010_400--Hb_001926_030 Hb_000302_270 Hb_000302_270 Hb_000010_400--Hb_000302_270 Hb_000521_320 Hb_000521_320 Hb_000010_400--Hb_000521_320 Hb_011316_050 Hb_011316_050 Hb_000453_170--Hb_011316_050 Hb_002496_030 Hb_002496_030 Hb_000453_170--Hb_002496_030 Hb_006316_040 Hb_006316_040 Hb_000453_170--Hb_006316_040 Hb_000453_170--Hb_004221_020 Hb_000827_070 Hb_000827_070 Hb_000453_170--Hb_000827_070 Hb_000453_170--Hb_000289_060 Hb_000201_100 Hb_000201_100 Hb_027295_050--Hb_000201_100 Hb_008554_030 Hb_008554_030 Hb_027295_050--Hb_008554_030 Hb_017358_030 Hb_017358_030 Hb_027295_050--Hb_017358_030 Hb_000453_050 Hb_000453_050 Hb_027295_050--Hb_000453_050 Hb_013607_030 Hb_013607_030 Hb_027295_050--Hb_013607_030 Hb_000165_250 Hb_000165_250 Hb_027295_050--Hb_000165_250 Hb_030736_100 Hb_030736_100 Hb_004155_010--Hb_030736_100 Hb_000160_210 Hb_000160_210 Hb_004155_010--Hb_000160_210 Hb_000836_440 Hb_000836_440 Hb_004155_010--Hb_000836_440 Hb_004155_010--Hb_000453_170 Hb_004724_060 Hb_004724_060 Hb_004155_010--Hb_004724_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.5728 38.3335 29.957 13.4438 41.8671 33.8093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.7306 38.9925 41.1596 28.4017 23.9006

CAGE analysis