Hb_077694_020

Information

Type -
Description -
Location Contig77694: 9276-9632
Sequence    

Annotation

kegg
ID tcc:TCM_015490
description SAUR family protein
nr
ID XP_007039174.1
description SAUR family protein [Theobroma cacao]
swissprot
ID Q9ZUZ3
description Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana GN=SAUR32 PE=2 SV=1
trembl
ID A0A061G1I7
description SAUR family protein OS=Theobroma cacao GN=TCM_015490 PE=4 SV=1
Gene Ontology
ID GO:0009733
description auxin-induced protein x15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 037_C20.ab1: 9068-9783

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_077694_020 0.0 - - SAUR family protein [Theobroma cacao]
2 Hb_004881_010 0.0843292211 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL1 [Jatropha curcas]
3 Hb_153180_010 0.1142694788 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
4 Hb_001675_290 0.1186499532 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
5 Hb_003427_020 0.1245802301 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
6 Hb_001417_090 0.1266782 - - PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas]
7 Hb_001856_130 0.1306825251 - - hypothetical protein CISIN_1g022795mg [Citrus sinensis]
8 Hb_001562_030 0.1315657265 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
9 Hb_030827_080 0.1332733345 - - PREDICTED: uncharacterized protein LOC105648491 [Jatropha curcas]
10 Hb_021576_160 0.1336188841 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
11 Hb_004324_100 0.1338767797 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
12 Hb_000000_320 0.1339858859 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
13 Hb_002739_160 0.1357858371 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
14 Hb_000010_220 0.1359776399 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
15 Hb_001198_180 0.1387746388 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
16 Hb_092975_010 0.1424495543 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
17 Hb_002522_040 0.1426351738 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
18 Hb_001677_190 0.1429807474 - - ATP-binding cassette transporter, putative [Ricinus communis]
19 Hb_000742_130 0.1434708765 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
20 Hb_036029_020 0.1444624507 - - PREDICTED: patellin-3-like [Jatropha curcas]

Gene co-expression network

sample Hb_077694_020 Hb_077694_020 Hb_004881_010 Hb_004881_010 Hb_077694_020--Hb_004881_010 Hb_153180_010 Hb_153180_010 Hb_077694_020--Hb_153180_010 Hb_001675_290 Hb_001675_290 Hb_077694_020--Hb_001675_290 Hb_003427_020 Hb_003427_020 Hb_077694_020--Hb_003427_020 Hb_001417_090 Hb_001417_090 Hb_077694_020--Hb_001417_090 Hb_001856_130 Hb_001856_130 Hb_077694_020--Hb_001856_130 Hb_000679_250 Hb_000679_250 Hb_004881_010--Hb_000679_250 Hb_000742_130 Hb_000742_130 Hb_004881_010--Hb_000742_130 Hb_092975_010 Hb_092975_010 Hb_004881_010--Hb_092975_010 Hb_002184_080 Hb_002184_080 Hb_004881_010--Hb_002184_080 Hb_004881_010--Hb_001675_290 Hb_030827_080 Hb_030827_080 Hb_153180_010--Hb_030827_080 Hb_002739_160 Hb_002739_160 Hb_153180_010--Hb_002739_160 Hb_153180_010--Hb_001856_130 Hb_001198_180 Hb_001198_180 Hb_153180_010--Hb_001198_180 Hb_002522_040 Hb_002522_040 Hb_153180_010--Hb_002522_040 Hb_008725_020 Hb_008725_020 Hb_153180_010--Hb_008725_020 Hb_007749_020 Hb_007749_020 Hb_001675_290--Hb_007749_020 Hb_036029_020 Hb_036029_020 Hb_001675_290--Hb_036029_020 Hb_001369_190 Hb_001369_190 Hb_001675_290--Hb_001369_190 Hb_006026_020 Hb_006026_020 Hb_001675_290--Hb_006026_020 Hb_004970_100 Hb_004970_100 Hb_001675_290--Hb_004970_100 Hb_001221_050 Hb_001221_050 Hb_003427_020--Hb_001221_050 Hb_021576_160 Hb_021576_160 Hb_003427_020--Hb_021576_160 Hb_001022_070 Hb_001022_070 Hb_003427_020--Hb_001022_070 Hb_002804_070 Hb_002804_070 Hb_003427_020--Hb_002804_070 Hb_000000_320 Hb_000000_320 Hb_003427_020--Hb_000000_320 Hb_005946_200 Hb_005946_200 Hb_003427_020--Hb_005946_200 Hb_120040_010 Hb_120040_010 Hb_001417_090--Hb_120040_010 Hb_001417_090--Hb_001856_130 Hb_000739_190 Hb_000739_190 Hb_001417_090--Hb_000739_190 Hb_001417_090--Hb_004970_100 Hb_000614_120 Hb_000614_120 Hb_001417_090--Hb_000614_120 Hb_000120_560 Hb_000120_560 Hb_001417_090--Hb_000120_560 Hb_000120_600 Hb_000120_600 Hb_001856_130--Hb_000120_600 Hb_001856_130--Hb_120040_010 Hb_001953_010 Hb_001953_010 Hb_001856_130--Hb_001953_010 Hb_001856_130--Hb_000000_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 18.3614 24.2745 50.1153 0 0.827838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.787642 0 4.16483 6.63025

CAGE analysis