Hb_078171_010

Information

Type -
Description -
Location Contig78171: 13925-16018
Sequence    

Annotation

kegg
ID mus:103981128
description uncharacterized protein LOC103981128 isoform X1
nr
ID XP_012065935.1
description PREDICTED: uncharacterized RING finger protein P8B7.15c-like [Jatropha curcas]
swissprot
ID P97868
description E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus GN=Rbbp6 PE=1 SV=5
trembl
ID A0A067L489
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22818 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dwnn a cchc-type zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078171_010 0.0 - - PREDICTED: uncharacterized RING finger protein P8B7.15c-like [Jatropha curcas]
2 Hb_034642_010 0.0955156896 - - PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
3 Hb_027506_060 0.1081632841 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
4 Hb_034581_010 0.1138982555 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
5 Hb_157957_010 0.1232339604 - - hypothetical protein JCGZ_10722 [Jatropha curcas]
6 Hb_110356_010 0.1270207341 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
7 Hb_000359_230 0.1275592935 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
8 Hb_002548_030 0.1280138931 - - PREDICTED: uncharacterized protein LOC103343650 [Prunus mume]
9 Hb_002542_030 0.1311612768 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
10 Hb_036754_040 0.1348580909 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
11 Hb_002252_030 0.1370958489 - - hypothetical protein JCGZ_06771 [Jatropha curcas]
12 Hb_001677_140 0.1414022429 - - PREDICTED: uncharacterized protein LOC102622520 isoform X1 [Citrus sinensis]
13 Hb_125201_010 0.1419568474 - - hypothetical protein POPTR_0004s03690g [Populus trichocarpa]
14 Hb_000032_150 0.143760858 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
15 Hb_047955_010 0.1438142761 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
16 Hb_010136_020 0.1446265521 - - stress-induced receptor-like kinase [Medicago truncatula]
17 Hb_002006_110 0.1459014674 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
18 Hb_184752_010 0.1477545351 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
19 Hb_064692_010 0.1493445841 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
20 Hb_099188_010 0.151568072 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]

Gene co-expression network

sample Hb_078171_010 Hb_078171_010 Hb_034642_010 Hb_034642_010 Hb_078171_010--Hb_034642_010 Hb_027506_060 Hb_027506_060 Hb_078171_010--Hb_027506_060 Hb_034581_010 Hb_034581_010 Hb_078171_010--Hb_034581_010 Hb_157957_010 Hb_157957_010 Hb_078171_010--Hb_157957_010 Hb_110356_010 Hb_110356_010 Hb_078171_010--Hb_110356_010 Hb_000359_230 Hb_000359_230 Hb_078171_010--Hb_000359_230 Hb_034642_010--Hb_027506_060 Hb_000032_150 Hb_000032_150 Hb_034642_010--Hb_000032_150 Hb_001257_040 Hb_001257_040 Hb_034642_010--Hb_001257_040 Hb_047955_010 Hb_047955_010 Hb_034642_010--Hb_047955_010 Hb_004586_120 Hb_004586_120 Hb_034642_010--Hb_004586_120 Hb_125201_010 Hb_125201_010 Hb_027506_060--Hb_125201_010 Hb_027506_060--Hb_047955_010 Hb_027506_060--Hb_000032_150 Hb_027506_060--Hb_001257_040 Hb_000086_600 Hb_000086_600 Hb_027506_060--Hb_000086_600 Hb_034581_010--Hb_110356_010 Hb_002548_030 Hb_002548_030 Hb_034581_010--Hb_002548_030 Hb_034581_010--Hb_000359_230 Hb_001677_140 Hb_001677_140 Hb_034581_010--Hb_001677_140 Hb_036754_040 Hb_036754_040 Hb_034581_010--Hb_036754_040 Hb_010136_020 Hb_010136_020 Hb_034581_010--Hb_010136_020 Hb_157957_010--Hb_034581_010 Hb_157957_010--Hb_036754_040 Hb_157957_010--Hb_110356_010 Hb_157957_010--Hb_000359_230 Hb_157957_010--Hb_002548_030 Hb_064692_010 Hb_064692_010 Hb_157957_010--Hb_064692_010 Hb_110356_010--Hb_002548_030 Hb_110356_010--Hb_000359_230 Hb_110356_010--Hb_001677_140 Hb_099188_010 Hb_099188_010 Hb_110356_010--Hb_099188_010 Hb_128851_020 Hb_128851_020 Hb_110356_010--Hb_128851_020 Hb_000359_230--Hb_002548_030 Hb_000359_230--Hb_099188_010 Hb_000359_230--Hb_001677_140 Hb_000359_230--Hb_128851_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.29453 0.452909 0.31196 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.05747 0 0 0

CAGE analysis