Hb_078477_060

Information

Type -
Description -
Location Contig78477: 34710-39246
Sequence    

Annotation

kegg
ID tcc:TCM_015395
description SET domain protein 16 isoform 1
nr
ID XP_012090074.1
description PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
swissprot
ID Q9SUE7
description Histone-lysine N-methyltransferase ATX4 OS=Arabidopsis thaliana GN=ATX4 PE=2 SV=3
trembl
ID A0A067JE56
description Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_25977 PE=4 SV=1
Gene Ontology
ID GO:0005634
description set domain protein 16 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58061: 35632-38067 , PASA_asmbl_58062: 38755-38976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078477_060 0.0 - - PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
2 Hb_000014_190 0.1087698977 - - Phytoene dehydrogenase, putative [Ricinus communis]
3 Hb_000963_090 0.119299223 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
4 Hb_003077_130 0.1235512614 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
5 Hb_001080_030 0.1317774222 - - AMP dependent ligase, putative [Ricinus communis]
6 Hb_001080_150 0.1329262913 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
7 Hb_001793_030 0.133020474 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
8 Hb_024714_080 0.135285071 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
9 Hb_008511_140 0.1366965174 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
10 Hb_003226_190 0.1367194197 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
11 Hb_166127_030 0.141650379 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_168031_020 0.1428457984 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
13 Hb_052946_010 0.1430132031 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
14 Hb_000069_490 0.1461899901 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003029_140 0.1464794562 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
16 Hb_173808_010 0.1476302539 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
17 Hb_000189_250 0.1505581011 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
18 Hb_000495_080 0.1526049822 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
19 Hb_000352_220 0.1541911519 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
20 Hb_000640_260 0.1543839023 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_078477_060 Hb_078477_060 Hb_000014_190 Hb_000014_190 Hb_078477_060--Hb_000014_190 Hb_000963_090 Hb_000963_090 Hb_078477_060--Hb_000963_090 Hb_003077_130 Hb_003077_130 Hb_078477_060--Hb_003077_130 Hb_001080_030 Hb_001080_030 Hb_078477_060--Hb_001080_030 Hb_001080_150 Hb_001080_150 Hb_078477_060--Hb_001080_150 Hb_001793_030 Hb_001793_030 Hb_078477_060--Hb_001793_030 Hb_003226_190 Hb_003226_190 Hb_000014_190--Hb_003226_190 Hb_000014_190--Hb_001080_030 Hb_009620_060 Hb_009620_060 Hb_000014_190--Hb_009620_060 Hb_000890_110 Hb_000890_110 Hb_000014_190--Hb_000890_110 Hb_000014_190--Hb_000963_090 Hb_010632_010 Hb_010632_010 Hb_000963_090--Hb_010632_010 Hb_000329_080 Hb_000329_080 Hb_000963_090--Hb_000329_080 Hb_002811_190 Hb_002811_190 Hb_000963_090--Hb_002811_190 Hb_001811_080 Hb_001811_080 Hb_000963_090--Hb_001811_080 Hb_000963_090--Hb_001080_150 Hb_024714_080 Hb_024714_080 Hb_003077_130--Hb_024714_080 Hb_000069_490 Hb_000069_490 Hb_003077_130--Hb_000069_490 Hb_000997_140 Hb_000997_140 Hb_003077_130--Hb_000997_140 Hb_004785_070 Hb_004785_070 Hb_003077_130--Hb_004785_070 Hb_028707_110 Hb_028707_110 Hb_003077_130--Hb_028707_110 Hb_010757_030 Hb_010757_030 Hb_003077_130--Hb_010757_030 Hb_052946_010 Hb_052946_010 Hb_001080_030--Hb_052946_010 Hb_000731_290 Hb_000731_290 Hb_001080_030--Hb_000731_290 Hb_005695_080 Hb_005695_080 Hb_001080_030--Hb_005695_080 Hb_159809_090 Hb_159809_090 Hb_001080_030--Hb_159809_090 Hb_008511_140 Hb_008511_140 Hb_001080_030--Hb_008511_140 Hb_001080_030--Hb_003226_190 Hb_001195_370 Hb_001195_370 Hb_001080_150--Hb_001195_370 Hb_062013_010 Hb_062013_010 Hb_001080_150--Hb_062013_010 Hb_001080_150--Hb_000329_080 Hb_007933_030 Hb_007933_030 Hb_001080_150--Hb_007933_030 Hb_001793_030--Hb_007933_030 Hb_168031_020 Hb_168031_020 Hb_001793_030--Hb_168031_020 Hb_001793_030--Hb_001080_150 Hb_001793_030--Hb_000329_080 Hb_000414_180 Hb_000414_180 Hb_001793_030--Hb_000414_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.666858 1.39995 1.36654 1.24478 0.637453 0.876899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.606977 0.551056 0.452444 2.58042 9.69598

CAGE analysis