Hb_078633_010

Information

Type -
Description -
Location Contig78633: 1-1696
Sequence    

Annotation

kegg
ID tcc:TCM_043069
description RNA-binding family protein isoform 1
nr
ID XP_012073739.1
description PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
swissprot
ID Q9M1S3
description Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1
trembl
ID A0A067LNV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06665 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding protein 24-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58111: 618-1648
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078633_010 0.0 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
2 Hb_001268_080 0.0791709453 - - catalytic, putative [Ricinus communis]
3 Hb_072912_020 0.0865536797 - - abhydrolase domain containing, putative [Ricinus communis]
4 Hb_005137_020 0.0906002835 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
5 Hb_001213_120 0.0921946844 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
6 Hb_000367_280 0.0978335559 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
7 Hb_000544_110 0.0996783776 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
8 Hb_004297_040 0.1014505141 - - acyl CoA reductase [Hevea brasiliensis]
9 Hb_001102_250 0.1124474561 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
10 Hb_008066_040 0.1141657182 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
11 Hb_011671_400 0.1157047947 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
12 Hb_103752_010 0.1161166403 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
13 Hb_149683_010 0.1188202252 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
14 Hb_003020_310 0.1221222432 - - glycosyltransferase, putative [Ricinus communis]
15 Hb_148121_010 0.1266867369 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005908_040 0.1320282312 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
17 Hb_001507_070 0.1346250389 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011245_020 0.1376845582 - - Ferrochelatase [Medicago truncatula]
19 Hb_000742_270 0.1383106477 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
20 Hb_003211_050 0.138722752 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_078633_010 Hb_078633_010 Hb_001268_080 Hb_001268_080 Hb_078633_010--Hb_001268_080 Hb_072912_020 Hb_072912_020 Hb_078633_010--Hb_072912_020 Hb_005137_020 Hb_005137_020 Hb_078633_010--Hb_005137_020 Hb_001213_120 Hb_001213_120 Hb_078633_010--Hb_001213_120 Hb_000367_280 Hb_000367_280 Hb_078633_010--Hb_000367_280 Hb_000544_110 Hb_000544_110 Hb_078633_010--Hb_000544_110 Hb_001268_080--Hb_000367_280 Hb_001268_080--Hb_001213_120 Hb_011245_020 Hb_011245_020 Hb_001268_080--Hb_011245_020 Hb_006831_030 Hb_006831_030 Hb_001268_080--Hb_006831_030 Hb_004297_040 Hb_004297_040 Hb_001268_080--Hb_004297_040 Hb_072912_020--Hb_000544_110 Hb_072912_020--Hb_005137_020 Hb_001102_250 Hb_001102_250 Hb_072912_020--Hb_001102_250 Hb_072912_020--Hb_004297_040 Hb_072912_020--Hb_001268_080 Hb_005137_020--Hb_000544_110 Hb_005908_040 Hb_005908_040 Hb_005137_020--Hb_005908_040 Hb_005137_020--Hb_001102_250 Hb_005137_020--Hb_004297_040 Hb_001213_120--Hb_000367_280 Hb_001213_120--Hb_004297_040 Hb_015934_020 Hb_015934_020 Hb_001213_120--Hb_015934_020 Hb_007810_030 Hb_007810_030 Hb_001213_120--Hb_007810_030 Hb_000367_280--Hb_011245_020 Hb_000367_280--Hb_007810_030 Hb_000367_280--Hb_004297_040 Hb_000544_110--Hb_001102_250 Hb_008066_040 Hb_008066_040 Hb_000544_110--Hb_008066_040 Hb_000544_110--Hb_005908_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
213.857 5.27693 3.36208 52.1459 52.4608 107.403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
488.619 559.158 408.341 46.1437 4.07398

CAGE analysis