Hb_078903_010

Information

Type -
Description -
Location Contig78903: 3780-4253
Sequence    

Annotation

kegg
ID rcu:RCOM_1685830
description Osmotin precursor, putative
nr
ID XP_002509748.1
description Osmotin precursor, putative [Ricinus communis]
swissprot
ID E3SU11
description Thaumatin-like protein OS=Olea europaea PE=1 SV=1
trembl
ID B9RC64
description Osmotin, putative OS=Ricinus communis GN=RCOM_1685830 PE=4 SV=1
Gene Ontology
ID GO:0050896
description thaumatin-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078903_010 0.0 - - Osmotin precursor, putative [Ricinus communis]
2 Hb_123560_010 0.018046337 - - hypothetical protein JCGZ_12463 [Jatropha curcas]
3 Hb_001652_060 0.0200014455 - - PREDICTED: uncharacterized protein LOC103404034 [Malus domestica]
4 Hb_005563_020 0.0402156917 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
5 Hb_002184_040 0.0494458743 transcription factor TF Family: bHLH transcription factor, putative [Ricinus communis]
6 Hb_001142_040 0.0509391575 - - PREDICTED: protein YLS9 [Jatropha curcas]
7 Hb_003857_010 0.057467404 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007926_020 0.0659536369 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
9 Hb_012136_010 0.0726738189 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
10 Hb_005066_060 0.073190253 - - FAD-binding Berberine family protein, putative [Theobroma cacao]
11 Hb_006533_010 0.0912105131 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
12 Hb_119748_010 0.1098212519 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
13 Hb_015146_010 0.1175544932 - - -
14 Hb_019708_010 0.1277361615 - - -
15 Hb_038135_010 0.1317214387 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
16 Hb_000836_400 0.1326030134 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 1 [Jatropha curcas]
17 Hb_041362_010 0.1420847674 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
18 Hb_000560_050 0.1440655178 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
19 Hb_010697_030 0.1530237762 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
20 Hb_000069_050 0.1581861729 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]

Gene co-expression network

sample Hb_078903_010 Hb_078903_010 Hb_123560_010 Hb_123560_010 Hb_078903_010--Hb_123560_010 Hb_001652_060 Hb_001652_060 Hb_078903_010--Hb_001652_060 Hb_005563_020 Hb_005563_020 Hb_078903_010--Hb_005563_020 Hb_002184_040 Hb_002184_040 Hb_078903_010--Hb_002184_040 Hb_001142_040 Hb_001142_040 Hb_078903_010--Hb_001142_040 Hb_003857_010 Hb_003857_010 Hb_078903_010--Hb_003857_010 Hb_123560_010--Hb_005563_020 Hb_123560_010--Hb_001652_060 Hb_012136_010 Hb_012136_010 Hb_123560_010--Hb_012136_010 Hb_005066_060 Hb_005066_060 Hb_123560_010--Hb_005066_060 Hb_123560_010--Hb_002184_040 Hb_001652_060--Hb_002184_040 Hb_001652_060--Hb_001142_040 Hb_001652_060--Hb_003857_010 Hb_007926_020 Hb_007926_020 Hb_001652_060--Hb_007926_020 Hb_005563_020--Hb_012136_010 Hb_005563_020--Hb_005066_060 Hb_006533_010 Hb_006533_010 Hb_005563_020--Hb_006533_010 Hb_005563_020--Hb_001652_060 Hb_002184_040--Hb_001142_040 Hb_002184_040--Hb_003857_010 Hb_002184_040--Hb_007926_020 Hb_001142_040--Hb_003857_010 Hb_001142_040--Hb_007926_020 Hb_001142_040--Hb_123560_010 Hb_003857_010--Hb_007926_020 Hb_003857_010--Hb_123560_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0482878 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.481757 0

CAGE analysis