Hb_078954_030

Information

Type -
Description -
Location Contig78954: 7622-10432
Sequence    

Annotation

kegg
ID rcu:RCOM_1711490
description hypothetical protein
nr
ID XP_002524154.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5P4Z6
description Protein TolB OS=Aromatoleum aromaticum (strain EbN1) GN=tolB PE=3 SV=1
trembl
ID B9SDT5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1711490 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58292: 9337-10260
cDNA
(Sanger)
(ID:Location)		 040_O22.ab1: 7685-8152

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078954_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001424_010 0.0338241543 - - serine/threonine protein kinase, putative [Ricinus communis]
3 Hb_179129_010 0.0402706338 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
4 Hb_004346_050 0.0448120045 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
5 Hb_000025_700 0.0508915827 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
6 Hb_016371_010 0.052082953 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
7 Hb_000530_040 0.057815381 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
8 Hb_002805_200 0.0579087116 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
9 Hb_000281_120 0.0621991975 - - protein binding protein, putative [Ricinus communis]
10 Hb_000359_050 0.0627386285 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
11 Hb_000340_280 0.0630333143 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003651_030 0.0637638936 - - lyase, putative [Ricinus communis]
13 Hb_001864_050 0.0703868783 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
14 Hb_000697_030 0.0715201176 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Pyrus x bretschneideri]
15 Hb_003573_030 0.0748599696 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
16 Hb_022167_010 0.0758800786 - - Kinase, putative isoform 2 [Theobroma cacao]
17 Hb_001006_150 0.076606117 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
18 Hb_001338_120 0.0782464239 - - hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]
19 Hb_048141_050 0.0784060403 - - hypothetical protein PRUPE_ppa009153mg [Prunus persica]
20 Hb_000962_090 0.0796372233 - - omega-6 fatty acid desaturase [Hevea brasiliensis]

Gene co-expression network

sample Hb_078954_030 Hb_078954_030 Hb_001424_010 Hb_001424_010 Hb_078954_030--Hb_001424_010 Hb_179129_010 Hb_179129_010 Hb_078954_030--Hb_179129_010 Hb_004346_050 Hb_004346_050 Hb_078954_030--Hb_004346_050 Hb_000025_700 Hb_000025_700 Hb_078954_030--Hb_000025_700 Hb_016371_010 Hb_016371_010 Hb_078954_030--Hb_016371_010 Hb_000530_040 Hb_000530_040 Hb_078954_030--Hb_000530_040 Hb_001424_010--Hb_000530_040 Hb_001424_010--Hb_179129_010 Hb_000697_030 Hb_000697_030 Hb_001424_010--Hb_000697_030 Hb_001424_010--Hb_016371_010 Hb_001424_010--Hb_000025_700 Hb_179129_010--Hb_004346_050 Hb_179129_010--Hb_016371_010 Hb_179129_010--Hb_000025_700 Hb_179129_010--Hb_000530_040 Hb_004346_050--Hb_016371_010 Hb_004346_050--Hb_000025_700 Hb_004346_050--Hb_001424_010 Hb_048141_050 Hb_048141_050 Hb_004346_050--Hb_048141_050 Hb_001369_340 Hb_001369_340 Hb_000025_700--Hb_001369_340 Hb_000025_700--Hb_016371_010 Hb_016371_010--Hb_000697_030 Hb_004411_010 Hb_004411_010 Hb_016371_010--Hb_004411_010 Hb_000530_040--Hb_000697_030 Hb_003573_030 Hb_003573_030 Hb_000530_040--Hb_003573_030 Hb_001975_120 Hb_001975_120 Hb_000530_040--Hb_001975_120 Hb_000069_220 Hb_000069_220 Hb_000530_040--Hb_000069_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.1044 9.83065 2.35684 0 0.00785226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0188556 0 0 0.0530503 7.71591

CAGE analysis