Hb_079268_010

Information

Type -
Description -
Location Contig79268: 200-2187
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079268_010 0.0 - - -
2 Hb_132998_020 0.1551952167 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
3 Hb_013839_010 0.163307064 - - Angio-associated migratory cell protein, putative [Ricinus communis]
4 Hb_137068_010 0.1846565983 - - hypothetical protein CISIN_1g003571mg [Citrus sinensis]
5 Hb_005568_080 0.1940101008 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003446_050 0.1988590503 - - hypothetical protein B456_002G034000, partial [Gossypium raimondii]
7 Hb_000317_400 0.198881611 transcription factor TF Family: zf-HD conserved hypothetical protein [Ricinus communis]
8 Hb_000879_010 0.2006573657 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
9 Hb_004242_080 0.2131806356 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
10 Hb_003683_040 0.2139431939 - - unnamed protein product [Coffea canephora]
11 Hb_000703_250 0.2152139195 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Jatropha curcas]
12 Hb_004800_070 0.2163574683 - - -
13 Hb_009265_090 0.2173621444 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
14 Hb_000987_120 0.2180383697 - - PREDICTED: protein SIEL [Jatropha curcas]
15 Hb_174865_030 0.2183841031 - - PREDICTED: hemiasterlin resistant protein 1 [Eucalyptus grandis]
16 Hb_000589_260 0.219251134 - - 3-hydroxybutyryl-CoA dehydratase, putative [Ricinus communis]
17 Hb_004230_040 0.2199624914 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000172_640 0.2209795123 - - hypothetical protein POPTR_0007s06250g [Populus trichocarpa]
19 Hb_001277_320 0.2211750565 - - Stem-specific protein TSJT1, putative [Ricinus communis]
20 Hb_004005_010 0.2214671913 - - PREDICTED: uncharacterized protein LOC102623333 isoform X2 [Citrus sinensis]

Gene co-expression network

sample Hb_079268_010 Hb_079268_010 Hb_132998_020 Hb_132998_020 Hb_079268_010--Hb_132998_020 Hb_013839_010 Hb_013839_010 Hb_079268_010--Hb_013839_010 Hb_137068_010 Hb_137068_010 Hb_079268_010--Hb_137068_010 Hb_005568_080 Hb_005568_080 Hb_079268_010--Hb_005568_080 Hb_003446_050 Hb_003446_050 Hb_079268_010--Hb_003446_050 Hb_000317_400 Hb_000317_400 Hb_079268_010--Hb_000317_400 Hb_132998_020--Hb_003446_050 Hb_009780_080 Hb_009780_080 Hb_132998_020--Hb_009780_080 Hb_005690_020 Hb_005690_020 Hb_132998_020--Hb_005690_020 Hb_000326_060 Hb_000326_060 Hb_132998_020--Hb_000326_060 Hb_000454_060 Hb_000454_060 Hb_132998_020--Hb_000454_060 Hb_000451_060 Hb_000451_060 Hb_013839_010--Hb_000451_060 Hb_153544_010 Hb_153544_010 Hb_013839_010--Hb_153544_010 Hb_000191_030 Hb_000191_030 Hb_013839_010--Hb_000191_030 Hb_008699_020 Hb_008699_020 Hb_013839_010--Hb_008699_020 Hb_116608_010 Hb_116608_010 Hb_013839_010--Hb_116608_010 Hb_001277_320 Hb_001277_320 Hb_013839_010--Hb_001277_320 Hb_137068_010--Hb_013839_010 Hb_137068_010--Hb_005568_080 Hb_000096_130 Hb_000096_130 Hb_137068_010--Hb_000096_130 Hb_021888_050 Hb_021888_050 Hb_137068_010--Hb_021888_050 Hb_000139_420 Hb_000139_420 Hb_137068_010--Hb_000139_420 Hb_005568_080--Hb_021888_050 Hb_005568_080--Hb_000326_060 Hb_033772_050 Hb_033772_050 Hb_005568_080--Hb_033772_050 Hb_009486_190 Hb_009486_190 Hb_005568_080--Hb_009486_190 Hb_009510_040 Hb_009510_040 Hb_005568_080--Hb_009510_040 Hb_003052_220 Hb_003052_220 Hb_005568_080--Hb_003052_220 Hb_003446_050--Hb_000326_060 Hb_007617_020 Hb_007617_020 Hb_003446_050--Hb_007617_020 Hb_012033_020 Hb_012033_020 Hb_003446_050--Hb_012033_020 Hb_064264_010 Hb_064264_010 Hb_003446_050--Hb_064264_010 Hb_000329_250 Hb_000329_250 Hb_000317_400--Hb_000329_250 Hb_000923_050 Hb_000923_050 Hb_000317_400--Hb_000923_050 Hb_001136_010 Hb_001136_010 Hb_000317_400--Hb_001136_010 Hb_000742_110 Hb_000742_110 Hb_000317_400--Hb_000742_110 Hb_001824_010 Hb_001824_010 Hb_000317_400--Hb_001824_010 Hb_000317_400--Hb_001277_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.73528 4.84755 1.33445 1.84737 5.92254 2.6069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3069 15.5467 1.48806 9.10931 0

CAGE analysis