Hb_079312_010

Information

Type -
Description -
Location Contig79312: 7361-9307
Sequence    

Annotation

kegg
ID rcu:RCOM_1752370
description hypothetical protein
nr
ID XP_002513710.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SZ67
description Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1
trembl
ID B9RIZ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1752370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58440: 7111-11224
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079312_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009803_050 0.0832000923 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
3 Hb_012423_030 0.0840506123 - - PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_003020_220 0.0845162029 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
5 Hb_003688_150 0.0941646947 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
6 Hb_003768_030 0.0948753248 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
7 Hb_000603_080 0.1004120587 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
8 Hb_007416_060 0.1006383491 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
9 Hb_000116_260 0.1014967756 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
10 Hb_000406_130 0.1023588082 - - vesicle-associated membrane protein, putative [Ricinus communis]
11 Hb_001195_200 0.1025278555 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
12 Hb_002307_170 0.1033357287 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
13 Hb_000471_110 0.1039474483 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Jatropha curcas]
14 Hb_000783_020 0.1043586167 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
15 Hb_000479_140 0.1052329866 - - TPA: hypothetical protein ZEAMMB73_881803, partial [Zea mays]
16 Hb_001352_020 0.1062007437 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
17 Hb_001486_180 0.1098954239 - - hypothetical protein B456_007G260200 [Gossypium raimondii]
18 Hb_005488_200 0.109935301 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
19 Hb_003376_250 0.1120185055 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
20 Hb_020805_130 0.1123672326 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_079312_010 Hb_079312_010 Hb_009803_050 Hb_009803_050 Hb_079312_010--Hb_009803_050 Hb_012423_030 Hb_012423_030 Hb_079312_010--Hb_012423_030 Hb_003020_220 Hb_003020_220 Hb_079312_010--Hb_003020_220 Hb_003688_150 Hb_003688_150 Hb_079312_010--Hb_003688_150 Hb_003768_030 Hb_003768_030 Hb_079312_010--Hb_003768_030 Hb_000603_080 Hb_000603_080 Hb_079312_010--Hb_000603_080 Hb_009803_050--Hb_000603_080 Hb_020805_130 Hb_020805_130 Hb_009803_050--Hb_020805_130 Hb_001959_190 Hb_001959_190 Hb_009803_050--Hb_001959_190 Hb_002878_020 Hb_002878_020 Hb_009803_050--Hb_002878_020 Hb_005162_060 Hb_005162_060 Hb_009803_050--Hb_005162_060 Hb_005488_200 Hb_005488_200 Hb_009803_050--Hb_005488_200 Hb_000107_160 Hb_000107_160 Hb_012423_030--Hb_000107_160 Hb_008453_030 Hb_008453_030 Hb_012423_030--Hb_008453_030 Hb_000327_060 Hb_000327_060 Hb_012423_030--Hb_000327_060 Hb_004324_270 Hb_004324_270 Hb_012423_030--Hb_004324_270 Hb_029879_130 Hb_029879_130 Hb_012423_030--Hb_029879_130 Hb_012675_050 Hb_012675_050 Hb_012423_030--Hb_012675_050 Hb_000352_270 Hb_000352_270 Hb_003020_220--Hb_000352_270 Hb_002988_040 Hb_002988_040 Hb_003020_220--Hb_002988_040 Hb_082609_010 Hb_082609_010 Hb_003020_220--Hb_082609_010 Hb_005237_050 Hb_005237_050 Hb_003020_220--Hb_005237_050 Hb_000510_290 Hb_000510_290 Hb_003020_220--Hb_000510_290 Hb_000783_020 Hb_000783_020 Hb_003688_150--Hb_000783_020 Hb_000120_460 Hb_000120_460 Hb_003688_150--Hb_000120_460 Hb_001619_070 Hb_001619_070 Hb_003688_150--Hb_001619_070 Hb_001318_270 Hb_001318_270 Hb_003688_150--Hb_001318_270 Hb_103118_010 Hb_103118_010 Hb_003688_150--Hb_103118_010 Hb_086639_040 Hb_086639_040 Hb_003688_150--Hb_086639_040 Hb_000053_020 Hb_000053_020 Hb_003768_030--Hb_000053_020 Hb_001195_200 Hb_001195_200 Hb_003768_030--Hb_001195_200 Hb_003768_030--Hb_004324_270 Hb_003768_030--Hb_008453_030 Hb_001489_080 Hb_001489_080 Hb_003768_030--Hb_001489_080 Hb_003768_030--Hb_012423_030 Hb_001314_070 Hb_001314_070 Hb_000603_080--Hb_001314_070 Hb_000603_080--Hb_005488_200 Hb_001504_330 Hb_001504_330 Hb_000603_080--Hb_001504_330 Hb_000982_080 Hb_000982_080 Hb_000603_080--Hb_000982_080 Hb_003994_260 Hb_003994_260 Hb_000603_080--Hb_003994_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.1043 24.9408 12.6348 26.0438 23.4299 20.3241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.0861 57.1172 63.0259 32.4273 56.7134

CAGE analysis