Hb_079394_010

Information

Type -
Description -
Location Contig79394: 85-441
Sequence    

Annotation

kegg
ID rcu:RCOM_0834660
description hydrolase, hydrolyzing O-glycosyl compounds, putative (EC:3.2.1.8)
nr
ID XP_002532419.1
description hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
swissprot
ID P45703
description Endo-1,4-beta-xylanase OS=Geobacillus stearothermophilus GN=xynA PE=1 SV=1
trembl
ID B9T2F0
description Hydrolase, hydrolyzing O-glycosyl compounds, putative OS=Ricinus communis GN=RCOM_0834660 PE=4 SV=1
Gene Ontology
ID GO:0031176
description hydrolyzing o-glycosyl

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079394_010 0.0 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
2 Hb_001004_130 0.1023691457 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
3 Hb_005333_210 0.1093177962 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
4 Hb_008376_020 0.1155678248 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
5 Hb_004519_010 0.1256667102 - - PREDICTED: basic form of pathogenesis-related protein 1-like [Jatropha curcas]
6 Hb_000832_250 0.1297937294 - - PREDICTED: protein UPSTREAM OF FLC-like [Jatropha curcas]
7 Hb_004709_030 0.1401895997 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
8 Hb_000230_020 0.1405977408 - - cysteine synthase, putative [Ricinus communis]
9 Hb_001300_140 0.1424204373 - - -
10 Hb_000844_090 0.1434807108 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
11 Hb_026419_010 0.1440871771 - - PREDICTED: cyclin-D3-1-like [Jatropha curcas]
12 Hb_000609_020 0.1478367895 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
13 Hb_032223_020 0.1482318823 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000847_120 0.152622444 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
15 Hb_000336_280 0.1538536363 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
16 Hb_011576_010 0.1541845217 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
17 Hb_000753_180 0.1543400342 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
18 Hb_006573_250 0.1620774375 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
19 Hb_000087_120 0.1656101322 - - AMP dependent CoA ligase, putative [Ricinus communis]
20 Hb_001019_210 0.1660578178 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]

Gene co-expression network

sample Hb_079394_010 Hb_079394_010 Hb_001004_130 Hb_001004_130 Hb_079394_010--Hb_001004_130 Hb_005333_210 Hb_005333_210 Hb_079394_010--Hb_005333_210 Hb_008376_020 Hb_008376_020 Hb_079394_010--Hb_008376_020 Hb_004519_010 Hb_004519_010 Hb_079394_010--Hb_004519_010 Hb_000832_250 Hb_000832_250 Hb_079394_010--Hb_000832_250 Hb_004709_030 Hb_004709_030 Hb_079394_010--Hb_004709_030 Hb_000844_090 Hb_000844_090 Hb_001004_130--Hb_000844_090 Hb_001004_130--Hb_008376_020 Hb_006573_250 Hb_006573_250 Hb_001004_130--Hb_006573_250 Hb_001005_210 Hb_001005_210 Hb_001004_130--Hb_001005_210 Hb_001300_140 Hb_001300_140 Hb_001004_130--Hb_001300_140 Hb_000336_280 Hb_000336_280 Hb_005333_210--Hb_000336_280 Hb_005333_210--Hb_001300_140 Hb_000215_130 Hb_000215_130 Hb_005333_210--Hb_000215_130 Hb_000753_180 Hb_000753_180 Hb_005333_210--Hb_000753_180 Hb_005333_210--Hb_001004_130 Hb_000609_020 Hb_000609_020 Hb_008376_020--Hb_000609_020 Hb_000847_120 Hb_000847_120 Hb_008376_020--Hb_000847_120 Hb_000000_200 Hb_000000_200 Hb_008376_020--Hb_000000_200 Hb_000645_250 Hb_000645_250 Hb_008376_020--Hb_000645_250 Hb_008376_020--Hb_006573_250 Hb_001019_210 Hb_001019_210 Hb_004519_010--Hb_001019_210 Hb_000215_420 Hb_000215_420 Hb_004519_010--Hb_000215_420 Hb_004519_010--Hb_000832_250 Hb_106321_010 Hb_106321_010 Hb_004519_010--Hb_106321_010 Hb_004519_010--Hb_000844_090 Hb_000832_250--Hb_001019_210 Hb_024948_010 Hb_024948_010 Hb_000832_250--Hb_024948_010 Hb_000832_250--Hb_000215_420 Hb_000101_370 Hb_000101_370 Hb_000832_250--Hb_000101_370 Hb_000365_440 Hb_000365_440 Hb_004709_030--Hb_000365_440 Hb_019278_010 Hb_019278_010 Hb_004709_030--Hb_019278_010 Hb_000087_120 Hb_000087_120 Hb_004709_030--Hb_000087_120 Hb_001186_120 Hb_001186_120 Hb_004709_030--Hb_001186_120 Hb_026419_010 Hb_026419_010 Hb_004709_030--Hb_026419_010 Hb_170023_010 Hb_170023_010 Hb_004709_030--Hb_170023_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.416382 22.6555 10.2361 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 42.8631 17.5702

CAGE analysis