Hb_079526_010

Information

Type -
Description -
Location Contig79526: 16139-18402
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24260g
description POPTRDRAFT_819477; lysine decarboxylase family protein
nr
ID XP_011019416.1
description PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Populus euphratica]
swissprot
ID Q84MC2
description Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 OS=Arabidopsis thaliana GN=LOG8 PE=1 SV=1
trembl
ID A0A067KD63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07648 PE=4 SV=1
Gene Ontology
ID GO:0005829
description cytokinin riboside 5 -monophosphate phosphoribohydrolase log8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079526_010 0.0 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Populus euphratica]
2 Hb_028960_010 0.1360718946 - - phosphoglycerate kinase, putative [Ricinus communis]
3 Hb_000359_070 0.1374496925 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
4 Hb_012940_020 0.1377131971 - - zeaxanthin epoxidase, putative [Ricinus communis]
5 Hb_003336_020 0.1515520014 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
6 Hb_156850_020 0.1515762309 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
7 Hb_054865_040 0.1527040875 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
8 Hb_011900_020 0.1558544261 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
9 Hb_000029_380 0.1560219935 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006816_040 0.1593418857 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
11 Hb_000360_010 0.1603256105 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_005228_060 0.1609721274 - - PREDICTED: uncharacterized protein LOC102604101 [Solanum tuberosum]
13 Hb_068804_110 0.1631971428 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
14 Hb_001691_180 0.1659808373 - - phosphoglycerate mutase, putative [Ricinus communis]
15 Hb_000367_220 0.1703171905 - - hypothetical protein RCOM_1470580 [Ricinus communis]
16 Hb_000107_540 0.1704453583 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
17 Hb_106552_030 0.1767044552 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
18 Hb_003171_040 0.1775028443 - - multidrug resistance pump, putative [Ricinus communis]
19 Hb_010080_070 0.180144823 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
20 Hb_015807_020 0.1805193597 - - gibberellin 20-oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_079526_010 Hb_079526_010 Hb_028960_010 Hb_028960_010 Hb_079526_010--Hb_028960_010 Hb_000359_070 Hb_000359_070 Hb_079526_010--Hb_000359_070 Hb_012940_020 Hb_012940_020 Hb_079526_010--Hb_012940_020 Hb_003336_020 Hb_003336_020 Hb_079526_010--Hb_003336_020 Hb_156850_020 Hb_156850_020 Hb_079526_010--Hb_156850_020 Hb_054865_040 Hb_054865_040 Hb_079526_010--Hb_054865_040 Hb_028960_010--Hb_012940_020 Hb_028960_010--Hb_156850_020 Hb_068804_110 Hb_068804_110 Hb_028960_010--Hb_068804_110 Hb_001691_180 Hb_001691_180 Hb_028960_010--Hb_001691_180 Hb_028960_010--Hb_000359_070 Hb_106552_030 Hb_106552_030 Hb_028960_010--Hb_106552_030 Hb_011900_020 Hb_011900_020 Hb_000359_070--Hb_011900_020 Hb_000359_070--Hb_156850_020 Hb_001266_160 Hb_001266_160 Hb_000359_070--Hb_001266_160 Hb_000359_070--Hb_012940_020 Hb_000038_020 Hb_000038_020 Hb_000359_070--Hb_000038_020 Hb_012940_020--Hb_156850_020 Hb_012940_020--Hb_068804_110 Hb_012940_020--Hb_003336_020 Hb_012940_020--Hb_106552_030 Hb_003336_020--Hb_028960_010 Hb_000699_080 Hb_000699_080 Hb_003336_020--Hb_000699_080 Hb_003336_020--Hb_000359_070 Hb_002686_060 Hb_002686_060 Hb_003336_020--Hb_002686_060 Hb_003336_020--Hb_156850_020 Hb_156850_020--Hb_106552_030 Hb_010080_070 Hb_010080_070 Hb_156850_020--Hb_010080_070 Hb_156850_020--Hb_011900_020 Hb_001856_290 Hb_001856_290 Hb_054865_040--Hb_001856_290 Hb_015807_020 Hb_015807_020 Hb_054865_040--Hb_015807_020 Hb_001146_030 Hb_001146_030 Hb_054865_040--Hb_001146_030 Hb_007101_090 Hb_007101_090 Hb_054865_040--Hb_007101_090 Hb_001085_200 Hb_001085_200 Hb_054865_040--Hb_001085_200 Hb_052139_010 Hb_052139_010 Hb_054865_040--Hb_052139_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0953586 0.904125 0.746809 0.0519465 0.158393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.186868 0.170425 0.377007 5.48865

CAGE analysis