Hb_079543_010

Information

Type -
Description -
Location Contig79543: 23-1288
Sequence    

Annotation

kegg
ID vvi:104880542
description uncharacterized LOC104880542
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID A5APH1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044466 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079543_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_000362_230 0.0152286379 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_155911_010 0.0274045386 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
4 Hb_002141_010 0.028524592 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
5 Hb_001142_020 0.0332829011 - - -
6 Hb_000227_110 0.0402545039 - - hypothetical protein CICLE_v10010500mg, partial [Citrus clementina]
7 Hb_000204_180 0.0680381198 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
8 Hb_128287_010 0.1092569483 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_108404_010 0.1279109102 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_002022_050 0.1440764176 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
11 Hb_002260_190 0.1517866892 - - -
12 Hb_002673_050 0.1759562065 - - -
13 Hb_000005_040 0.1762442455 - - PREDICTED: histone H2B.2 [Jatropha curcas]
14 Hb_091369_010 0.177963076 - - -
15 Hb_008473_010 0.1789345747 - - PREDICTED: laccase-14-like [Jatropha curcas]
16 Hb_000944_010 0.1894789228 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
17 Hb_003400_030 0.1895759013 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
18 Hb_002400_450 0.194238799 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
19 Hb_000260_190 0.1966469633 - - -
20 Hb_002232_200 0.1987874737 - - PREDICTED: sugar carrier protein C-like [Jatropha curcas]

Gene co-expression network

sample Hb_079543_010 Hb_079543_010 Hb_000362_230 Hb_000362_230 Hb_079543_010--Hb_000362_230 Hb_155911_010 Hb_155911_010 Hb_079543_010--Hb_155911_010 Hb_002141_010 Hb_002141_010 Hb_079543_010--Hb_002141_010 Hb_001142_020 Hb_001142_020 Hb_079543_010--Hb_001142_020 Hb_000227_110 Hb_000227_110 Hb_079543_010--Hb_000227_110 Hb_000204_180 Hb_000204_180 Hb_079543_010--Hb_000204_180 Hb_000362_230--Hb_155911_010 Hb_000362_230--Hb_001142_020 Hb_000362_230--Hb_002141_010 Hb_000362_230--Hb_000227_110 Hb_000362_230--Hb_000204_180 Hb_155911_010--Hb_001142_020 Hb_155911_010--Hb_002141_010 Hb_155911_010--Hb_000227_110 Hb_155911_010--Hb_000204_180 Hb_002141_010--Hb_000227_110 Hb_002141_010--Hb_000204_180 Hb_002141_010--Hb_001142_020 Hb_001142_020--Hb_000227_110 Hb_001142_020--Hb_000204_180 Hb_000227_110--Hb_000204_180 Hb_128287_010 Hb_128287_010 Hb_000227_110--Hb_128287_010 Hb_000204_180--Hb_128287_010 Hb_108404_010 Hb_108404_010 Hb_000204_180--Hb_108404_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0531404 0.0195394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis