Hb_079576_010

Information

Type -
Description -
Location Contig79576: 35-566
Sequence    

Annotation

kegg
ID fve:101314641
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1-like
nr
ID XP_011460350.1
description PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
swissprot
ID Q8W4G6
description Cysteine-rich receptor-like protein kinase 15 OS=Arabidopsis thaliana GN=CRK15 PE=2 SV=2
trembl
ID A0A067K6D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20198 PE=4 SV=1
Gene Ontology
ID GO:0004672
description g-type lectin s-receptor-like serine threonine-protein kinase rks1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079576_010 0.0 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
2 Hb_068492_010 0.2126551955 - - -
3 Hb_003142_090 0.2447512817 - - Kinase, putative isoform 2 [Theobroma cacao]
4 Hb_002375_050 0.2456808497 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
5 Hb_001366_130 0.2483275259 - - unnamed protein product [Coffea canephora]
6 Hb_000421_020 0.2525675282 - - ascorbate peroxidase [Hevea brasiliensis]
7 Hb_001140_320 0.2531750788 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
8 Hb_006846_020 0.2541445802 - - PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
9 Hb_002477_120 0.261725329 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
10 Hb_025236_020 0.2621496838 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
11 Hb_002641_050 0.2642574972 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 48 [Jatropha curcas]
12 Hb_001374_040 0.2655297835 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium raimondii]
13 Hb_095694_010 0.2674889351 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
14 Hb_000345_340 0.2676933825 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
15 Hb_098256_010 0.2687238583 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
16 Hb_008667_060 0.2704927517 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
17 Hb_004667_040 0.2705167922 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000027_130 0.2714968816 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
19 Hb_000575_090 0.2760174131 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Populus euphratica]
20 Hb_110558_010 0.276236949 - - PREDICTED: uncharacterized protein LOC105641877 [Jatropha curcas]

Gene co-expression network

sample Hb_079576_010 Hb_079576_010 Hb_068492_010 Hb_068492_010 Hb_079576_010--Hb_068492_010 Hb_003142_090 Hb_003142_090 Hb_079576_010--Hb_003142_090 Hb_002375_050 Hb_002375_050 Hb_079576_010--Hb_002375_050 Hb_001366_130 Hb_001366_130 Hb_079576_010--Hb_001366_130 Hb_000421_020 Hb_000421_020 Hb_079576_010--Hb_000421_020 Hb_001140_320 Hb_001140_320 Hb_079576_010--Hb_001140_320 Hb_029622_020 Hb_029622_020 Hb_068492_010--Hb_029622_020 Hb_002641_050 Hb_002641_050 Hb_068492_010--Hb_002641_050 Hb_000051_030 Hb_000051_030 Hb_068492_010--Hb_000051_030 Hb_008453_080 Hb_008453_080 Hb_068492_010--Hb_008453_080 Hb_000836_610 Hb_000836_610 Hb_068492_010--Hb_000836_610 Hb_019863_030 Hb_019863_030 Hb_068492_010--Hb_019863_030 Hb_000067_030 Hb_000067_030 Hb_003142_090--Hb_000067_030 Hb_003371_140 Hb_003371_140 Hb_003142_090--Hb_003371_140 Hb_006501_170 Hb_006501_170 Hb_003142_090--Hb_006501_170 Hb_061350_010 Hb_061350_010 Hb_003142_090--Hb_061350_010 Hb_002518_270 Hb_002518_270 Hb_003142_090--Hb_002518_270 Hb_000126_040 Hb_000126_040 Hb_003142_090--Hb_000126_040 Hb_002375_050--Hb_000421_020 Hb_000189_470 Hb_000189_470 Hb_002375_050--Hb_000189_470 Hb_002471_140 Hb_002471_140 Hb_002375_050--Hb_002471_140 Hb_000345_340 Hb_000345_340 Hb_002375_050--Hb_000345_340 Hb_001053_200 Hb_001053_200 Hb_002375_050--Hb_001053_200 Hb_008175_030 Hb_008175_030 Hb_002375_050--Hb_008175_030 Hb_006120_080 Hb_006120_080 Hb_001366_130--Hb_006120_080 Hb_000920_220 Hb_000920_220 Hb_001366_130--Hb_000920_220 Hb_008667_060 Hb_008667_060 Hb_001366_130--Hb_008667_060 Hb_178793_010 Hb_178793_010 Hb_001366_130--Hb_178793_010 Hb_002874_170 Hb_002874_170 Hb_001366_130--Hb_002874_170 Hb_000038_040 Hb_000038_040 Hb_001366_130--Hb_000038_040 Hb_025236_020 Hb_025236_020 Hb_000421_020--Hb_025236_020 Hb_000008_430 Hb_000008_430 Hb_000421_020--Hb_000008_430 Hb_002910_010 Hb_002910_010 Hb_000421_020--Hb_002910_010 Hb_003589_020 Hb_003589_020 Hb_000421_020--Hb_003589_020 Hb_002343_020 Hb_002343_020 Hb_000421_020--Hb_002343_020 Hb_000575_090 Hb_000575_090 Hb_001140_320--Hb_000575_090 Hb_000836_560 Hb_000836_560 Hb_001140_320--Hb_000836_560 Hb_001140_320--Hb_000067_030 Hb_001374_040 Hb_001374_040 Hb_001140_320--Hb_001374_040 Hb_007919_030 Hb_007919_030 Hb_001140_320--Hb_007919_030 Hb_001365_050 Hb_001365_050 Hb_001140_320--Hb_001365_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.243143 1.05311 0.546832 0.122045 0 0.0737177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.301457 0 0.579105 0.266668

CAGE analysis