Hb_079738_010

Information

Type -
Description -
Location Contig79738: 1468-2474
Sequence    

Annotation

kegg
ID cit:102630659
description uncharacterized LOC102630659
nr
ID KDO49794.1
description hypothetical protein CISIN_1g036582mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067E3L9
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g036582mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079738_010 0.0 - - hypothetical protein CISIN_1g036582mg, partial [Citrus sinensis]
2 Hb_008528_010 0.1201094241 - - PREDICTED: uncharacterized protein LOC105628498 [Jatropha curcas]
3 Hb_005228_080 0.1336944092 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I [Jatropha curcas]
4 Hb_188964_010 0.1425821557 - - maintenance of killer 16 (mak16) protein, putative [Ricinus communis]
5 Hb_000003_790 0.1443509576 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
6 Hb_000906_060 0.1448553937 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Populus euphratica]
7 Hb_000270_140 0.1448957086 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
8 Hb_003406_040 0.146845928 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
9 Hb_000940_040 0.1487493126 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
10 Hb_004567_100 0.1504325393 - - PREDICTED: uncharacterized protein LOC105644934 [Jatropha curcas]
11 Hb_012016_020 0.1505234208 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
12 Hb_001486_120 0.150568963 - - PREDICTED: importin-5-like [Jatropha curcas]
13 Hb_000136_150 0.1509845893 - - hypothetical protein VITISV_038366 [Vitis vinifera]
14 Hb_000317_440 0.1516387665 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
15 Hb_001582_030 0.1531130885 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
16 Hb_007380_080 0.1542567362 transcription factor TF Family: G2-like PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
17 Hb_028900_020 0.1554313105 - - unnamed protein product [Coffea canephora]
18 Hb_007447_010 0.1566266073 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
19 Hb_002046_040 0.1571464197 - - PREDICTED: topless-related protein 4 [Malus domestica]
20 Hb_001437_100 0.1578690053 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]

Gene co-expression network

sample Hb_079738_010 Hb_079738_010 Hb_008528_010 Hb_008528_010 Hb_079738_010--Hb_008528_010 Hb_005228_080 Hb_005228_080 Hb_079738_010--Hb_005228_080 Hb_188964_010 Hb_188964_010 Hb_079738_010--Hb_188964_010 Hb_000003_790 Hb_000003_790 Hb_079738_010--Hb_000003_790 Hb_000906_060 Hb_000906_060 Hb_079738_010--Hb_000906_060 Hb_000270_140 Hb_000270_140 Hb_079738_010--Hb_000270_140 Hb_000134_360 Hb_000134_360 Hb_008528_010--Hb_000134_360 Hb_008528_010--Hb_000003_790 Hb_001486_120 Hb_001486_120 Hb_008528_010--Hb_001486_120 Hb_001582_030 Hb_001582_030 Hb_008528_010--Hb_001582_030 Hb_022288_010 Hb_022288_010 Hb_008528_010--Hb_022288_010 Hb_012016_020 Hb_012016_020 Hb_008528_010--Hb_012016_020 Hb_005228_080--Hb_188964_010 Hb_004567_100 Hb_004567_100 Hb_005228_080--Hb_004567_100 Hb_002687_190 Hb_002687_190 Hb_005228_080--Hb_002687_190 Hb_002235_320 Hb_002235_320 Hb_005228_080--Hb_002235_320 Hb_005228_080--Hb_000003_790 Hb_003581_020 Hb_003581_020 Hb_005228_080--Hb_003581_020 Hb_188964_010--Hb_003581_020 Hb_188964_010--Hb_000906_060 Hb_188964_010--Hb_004567_100 Hb_188964_010--Hb_001582_030 Hb_000613_100 Hb_000613_100 Hb_188964_010--Hb_000613_100 Hb_000003_790--Hb_000134_360 Hb_000317_440 Hb_000317_440 Hb_000003_790--Hb_000317_440 Hb_001975_020 Hb_001975_020 Hb_000003_790--Hb_001975_020 Hb_000003_790--Hb_002235_320 Hb_002725_070 Hb_002725_070 Hb_000003_790--Hb_002725_070 Hb_004724_360 Hb_004724_360 Hb_000906_060--Hb_004724_360 Hb_001504_160 Hb_001504_160 Hb_000906_060--Hb_001504_160 Hb_000906_060--Hb_012016_020 Hb_012654_010 Hb_012654_010 Hb_000906_060--Hb_012654_010 Hb_002341_030 Hb_002341_030 Hb_000906_060--Hb_002341_030 Hb_001575_080 Hb_001575_080 Hb_000906_060--Hb_001575_080 Hb_000270_140--Hb_000906_060 Hb_017711_020 Hb_017711_020 Hb_000270_140--Hb_017711_020 Hb_005214_160 Hb_005214_160 Hb_000270_140--Hb_005214_160 Hb_003097_190 Hb_003097_190 Hb_000270_140--Hb_003097_190 Hb_000422_140 Hb_000422_140 Hb_000270_140--Hb_000422_140 Hb_000270_140--Hb_004567_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4202 0.877452 0.473863 0.170631 4.41562 5.58077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.50191 0.843483 1.21559 0.911848 1.01136

CAGE analysis